c0f24814891eec0c1c45a0c9d341ae086fa548c7 hiram Mon Apr 11 10:18:25 2022 -0700 bogus debugging messages removed refs #29203 diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh index 094efd7..f8baff8 100755 --- src/hg/utils/automation/asmHubTrackDb.sh +++ src/hg/utils/automation/asmHubTrackDb.sh @@ -22,37 +22,30 @@ export scriptDir="$HOME/kent/src/hg/utils/automation" # technique to set variables based on the name in another variable: if [ -s "$buildDir/dropTracks.list" ]; then printf "# reading dropTracks.list\n" 1>&2 for dropTrack in `cat "$buildDir/dropTracks.list"` do notTrack="not_${dropTrack}" # printf "# %s\n" "${notTrack}" 1>&2 eval $notTrack="1" done fi -if [ -z ${not_tanDups+x} ]; then - printf "# skipping the tanDups track\n" 1>&2 -fi -if [ -z ${not_augustus+x} ]; then - printf "# skipping the augustus track\n" 1>&2 -fi - mkdir -p $buildDir/bbi mkdir -p $buildDir/ixIxx # may or may not have a searchTrix for assembly, assume none export searchTrix="" # check to see if there is a searchTrix assembly index if [ -s ${buildDir}/trackData/assemblyGap/${asmId}.assembly.ix ]; then rm -f $buildDir/ixIxx/${asmId}.assembly.ix* ln -s ../trackData/assemblyGap/${asmId}.assembly.ix $buildDir/ixIxx ln -s ../trackData/assemblyGap/${asmId}.assembly.ixx $buildDir/ixIxx searchTrix=" searchTrix ixIxx/${asmId}.assembly.ix" fi if [ -s ${buildDir}/trackData/assemblyGap/${asmId}.assembly.bb ]; then