c5168394dbf70b3d5712c2b613d29e710c5fb23d hiram Mon Apr 11 20:19:57 2022 -0700 no need for species in gateway page refs #29203 diff --git src/hg/utils/automation/doAssemblyHub.pl src/hg/utils/automation/doAssemblyHub.pl index 24f2956..4a70f89 100755 --- src/hg/utils/automation/doAssemblyHub.pl +++ src/hg/utils/automation/doAssemblyHub.pl @@ -1077,31 +1077,30 @@ my $photoJpg = "noPhoto"; my $photoCredit = "noPhoto"; my $photoLink = ""; my $speciesNoBlank = $species; $speciesNoBlank =~ s/ /_/g; if ( -s "$runDir/../photo/$speciesNoBlank.jpg" ) { $photoJpg = "../photo/\${species}.jpg"; $photoCredit = "../photo/photoCredits.txt"; $photoLink = "rm -f \${species}.jpg; ln -s ../photo/\${species}.jpg ." } else { printf STDERR "# gatewayPage: warning: no photograph available\n"; } $bossScript->add(<<_EOF_ export asmId=$asmId -export species=$speciesNoBlank \$HOME/kent/src/hg/utils/automation/asmHubGatewayPage.pl \\ $asmHubName ../download/\${asmId}_assembly_report.txt \\ ../\${asmId}.chrom.sizes \\ $photoJpg $photoCredit \\ > \$asmId.description.html 2> \$asmId.names.tab \$HOME/kent/src/hg/utils/automation/genbank/buildStats.pl \\ ../\$asmId.chrom.sizes 2> \$asmId.build.stats.txt $photoLink _EOF_ ); $bossScript->execute(); } # gatewayPage #########################################################################