ee94193b5dde0c82d298205d0976617f70759a79 jcasper Wed Apr 13 17:00:58 2022 -0700 Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 814fb2d..2dee413 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,96 @@ <div class="col-sm-3"> <ul> <li><a href="#2006">2006 News</a></li> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2001">2001</a>-<a href="#2002">2002 News</a></li> </ul> </div> </div> </div> <!-- ============= 2022 archived news ============= --> <a name="2022"></a> +<!-- PREPPED FOR RELEASE +<a name="041522"></a> +<h2>Apr. 15, 2022 Merged Cell Expression on hg38</h2> +<p> +The Genome Browser already provided <a href="#111721">single-cell RNA-seq datasets</a> for the +human GRCh38/hg38 assembly, but those data have so far been split among a collection of tracks +depending on the organ and publication source. We are happy to announce that data from 12 of +those papers (and 14 organs) are now available in a combined +<a href="../cgi-bin/hgTrackUi?db=hg38&g=singleCellMerged">Merged Cells</a> track that provides +normalized RNA-seq values for every cell type in those sets. All components were normalized +to show expression in parts per million.</p> +<figure class="text-center"> +<img src="../images/singleCell/singleCellMerged.png" style="width: 80%; max-width: 1318px;" +alt="Example of the Merged Cells track display for the ACE2 gene"> +</figure> +<p> +The following tracks were incorporated into this Merged Cells track: +<ul> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=bloodHao&position=default">Blood (PBMC) Hao</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=colonWang&position=default">Colon Wang</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=cortexVelmeshev&position=default">Cortex Velmeshev</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=fetalGeneAtlas&position=default">Fetal Gene Atlas</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=heartCellAtlas&position=default">Heart Cell Atlas</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=ileumWang&position=default">Ileum Wang</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=kidneyStewart&position=default">Kidney Stewart</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=liverMacParland&position=default">Liver MacParland</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=lungTravaglini2020&position=default">Lung Travaglini</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=muscleDeMicheli&position=default">Muscle De Micheli</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=pancreasBaron&position=default">Pancreas Baron</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=placentaVentoTormo&position=default">Placenta Vento-Tormo</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=rectumWang&position=default">Rectum Wang</a> +</li> +<li> +<a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=skinSoleBoldo&position=default">Skin Sole-Boldo</a> +</li> +</ul> +We hope that this combined format will facilitate research and comparison with the recently +released <a href="#033122">Tabula Sapiens</a> expression tracks. +</p> +END PREPPED FOR RELEASE --> + <a name="041222"></a> <h2>Apr. 12, 2022 T2T CHM13 v2.0 now available in the Genome Browser</h2> <p> The Genome Browser has a <a href="/goldenPath/history.html">rich history</a> intricately connected to human genomic research. We have provided display to almost two dozen human genomes beginning with the first drafts in the year 2000. Nearly 22 years later, the <a href="https://sites.google.com/ucsc.edu/t2tworkinggroup" target="_blank">T2T consortium</a> has published the most complete human haploid genome sequence to date, having added just about all of the 200 million bases (8%) missing from the current reference. We are proud of all the scientists involved, including our colleagues in the <a href="https://genomics.ucsc.edu/" target="_blank">UCSC Genomics Institute</a>, who played a role in this release. We strive to facilitate omics research and thus would like to announce our expanded support for the <a href="/cgi-bin/hgTracks?hubUrl=https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt&genome=GCA_009914755.4&position=lastDbPos" target="_blank">T2T-CHM13 v2.0 browser</a>.</p>