e199edebab9458a3b535bb2d0e32c52167d8fdae
jcasper
  Fri Apr 15 14:09:59 2022 -0700
Adding pack/squish to hic tracks, plus interaction distance filters.  refs #29280

diff --git src/hg/inc/hicUi.h src/hg/inc/hicUi.h
index 0c87a2f..341fb72 100644
--- src/hg/inc/hicUi.h
+++ src/hg/inc/hicUi.h
@@ -1,97 +1,109 @@
 /* hic track UI */
 
 /* Copyright (C) 2019 The Regents of the University of California 
  * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef HIC_UI_H
 #define HIC_UI_H
 
 #include "hic.h"
 
 /* Number of bins to split score values into, also the number of gradient
  * steps in the color values from lowest to highest.  1024 is already overkill
  * for hex-valued colors. */
 #define HIC_SCORE_BINS              1024
 
 
 /* hic-specific trackDb setting names */
 
 #define HIC_TDB_DRAW_MODE       "drawMode"
 #define HIC_TDB_NORMALIZATION   "normalization"
 #define HIC_TDB_RESOLUTION      "resolution" 
 #define HIC_TDB_MAX_VALUE       "saturationScore"
 #define HIC_TDB_AUTOSCALE       "autoScale"
 #define HIC_TDB_COLOR           "color"
+#define HIC_TDB_MAX_DISTANCE    "hicDistanceMax"
+#define HIC_TDB_MIN_DISTANCE    "hicDistanceMin"
 
 
 /* Cart variables */
 
 #define HIC_DRAW_MODE               "drawMode"
 #define HIC_DRAW_MODE_TRIANGLE      "triangle"
 #define HIC_DRAW_MODE_SQUARE        "square"
 #define HIC_DRAW_MODE_ARC           "arc"
 #define HIC_DRAW_MODE_DEFAULT       HIC_DRAW_MODE_TRIANGLE
 #define HIC_NORMALIZATION           "normalization"
 #define HIC_RESOLUTION              "resolution"
 #define HIC_DRAW_AUTOSCALE          "autoscale"
 #define HIC_DRAW_MAX_VALUE          "max"
 #define HIC_DRAW_MAX_VALUE_DEFAULT  100
 #define HIC_DRAW_COLOR              "color"
 #define HIC_DRAW_BG_COLOR           "bgColor"
 /* Default to drawing red on a white background */
 #define HIC_DRAW_COLOR_DEFAULT      "#ff0000"
 #define HIC_DRAW_BG_COLOR_DEFAULT   "#ffffff"
+#define HIC_DRAW_MAX_DISTANCE       "maxDistance"
+#define HIC_DRAW_MIN_DISTANCE       "minDistance"
 
 
 void hicCfgUi(char *database, struct cart *cart, struct trackDb *tdb, char *track,
                         char *title, boolean boxed);
 /* Draw the list of track configuration options for Hi-C tracks */
 
 void hicCfgUiComposite(struct cart *cart, struct trackDb *tdb, char *track,
                         char *title, boolean boxed);
 /* Draw the (empty) list of track configuration options for a composite of Hi-C tracks */
 
 char *hicUiFetchResolution(struct cart *cart, struct trackDb *tdb, struct hicMeta *meta);
 /* Return the current resolution selection, or the default if none
  * has been selected. */
 
 void hicUiResolutionDropDown(struct cart *cart, struct trackDb *tdb, struct hicMeta *meta);
 /* Draw a dropdown menu in HTML to select which binSize to use for fetching data */
 
 int hicUiFetchResolutionAsInt(struct cart *cart, struct trackDb *tdb, struct hicMeta *meta, int windowSize);
 /* Return the current resolution selection as an integer.  If there is no selection, or if "Auto"
  * has been selected, return the largest available value that still partitions the window into at
  * least 5000 bins. */
 
 char *hicUiFetchNormalization(struct cart *cart, struct trackDb *tdb, struct hicMeta *meta);
 /* Return the current normalization selection, or the default if none
  * has been selected.  Right now this is a hard-coded set specifically for
  * .hic files, but in the future this list might be dynamically determined by
  * the contents and format of the Hi-C file. */
 
 void hicUiNormalizationDropDown(struct cart *cart, struct trackDb *tdb, struct hicMeta *meta);
 /* Draw a dropdown menu in HTML to select the normalization method to use. */
 
 char *hicUiFetchDrawMode(struct cart *cart, struct trackDb *tdb);
 /* Return the current draw mode selection, or the default if none
  * has been selected. */
 
 char *hicUiFetchDrawColor(struct cart *cart, struct trackDb *tdb);
 /* Retrieve the HTML hex code for the color to draw the
  * track values in (e.g., #00ffa1) */
 
 char *hicUiFetchBgColor(struct cart *cart, struct trackDb *tdb);
 /* Retrieve the HTML hex code of the background color for the 
  * track.  This is the color associated with scores at or close to 0. */
 
 boolean hicUiFetchAutoScale(struct cart *cart, struct trackDb *tdb);
 /* Returns whether the track is configured to automatically scale its color range
  * depending on the scores present in the window (true), or if it should stick to a
  * gradient based on the user's selected maximum value (false). */
 
 double  hicUiFetchMaxValue(struct cart *cart, struct trackDb *tdb);
 /* Retrieve the score value at which the draw color reaches its
  * its maximum intensity.  Any scores above this value will
  * share that same draw color. */
 
+double hicUiMaxInteractionRange(struct cart *cart, struct trackDb *tdb);
+/* Retrieve the maximum range for an interaction to be drawn.  Range is
+ * calculated from the left-most start to the right-most end of the interaction. */
+
+double hicUiMinInteractionRange(struct cart *cart, struct trackDb *tdb);
+/* Retrieve the minimum range for an interaction to be drawn.  Range is
+ * calculated from the left-most start to the right-most end of the interaction. */
+
 #endif