aa9ae872827329ab53c58e8ed41adeeac17021be
lrnassar
  Fri Apr 15 14:01:49 2022 -0700
Fixing translated RNA, feedback from CR refs #29215

diff --git src/hg/htdocs/FAQ/FAQblat.html src/hg/htdocs/FAQ/FAQblat.html
index 24c5a67..1c52bed 100755
--- src/hg/htdocs/FAQ/FAQblat.html
+++ src/hg/htdocs/FAQ/FAQblat.html
@@ -479,21 +479,21 @@
 href="https://www.wikiwand.com/en/DNA_and_RNA_codon_tables">Wikiwand website</a>.
 </p>
 
 <a name="blat14"></a>
 <h2>Querying BLAT programmatically using URLs</h2>
 <p>
 For programmatic access, BLAT supports URL queries which are returned as psl format in a JSON structure. 
 The URL requires three variables: the sequence to blat, the type of query and the database, as follows</p>
 <pre>
 https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=[seq]&amp;type=[type]&amp;db=[database]&amp;output=json</pre>
 <p>
 Query types include DNA, protein, translated RNA and translated DNA:</p>
 <pre>
 <a href="https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=GACCTCGGCGTGGCCTAGCG&amp;type=DNA&amp;db=hg38&amp;output=json">https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=GACCTCGGCGTGGCCTAGCG&amp;type=DNA&amp;db=hg38&amp;output=json</a>
 <a href="https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=IGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNM&amp;type=protein&amp;db=hg38&amp;output=json">https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=IGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNM&amp;type=protein&amp;db=hg38&amp;output=json</a>
-<a href="https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=TTTCCCTTCCCCACTGTAGTGGGAGAGAAGGGAGTGGCCATACCATATTTTTCTCGTGGGCCGTTGTAGTCATAAGGCCTTCCTTTGCGGAAAATTTTCAGGGTGGGATA&amp;type=translated%20RNA&amp;db=hg38&amp;output=json">https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=TTTCCCTTCCCCACTGTAGTGGGAGAGAAGGGAGTGGCCATACCATATTTTTCTCGTGGGCCGTTGTAGTCATAAGGCCTTCCTTTGCGGAAAATTTTCAGGGTGGGATA&amp;type=translated%20RNA&amp;db=hg38&amp;output=json</a>
+<a href="https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=UUUCCCUUCCCCACUGUAGUGGGAGAGAAGGGAGUGGCCAUACCAUAUUUUUCUCGUGGGCCGUUGUAGUCAUAAGGCCUUCCUUUGCGGAAAAUUUUCAGGGUGGGAUA&amp;type=translated%20RNA&amp;db=hg38&amp;output=json">https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=UUUCCCUUCCCCACUGUAGUGGGAGAGAAGGGAGUGGCCAUACCAUAUUUUUCUCGUGGGCCGUUGUAGUCAUAAGGCCUUCCUUUGCGGAAAAUUUUCAGGGUGGGAUA&type=translated%20RNA&db=hg38&output=json</a>
 <a href="https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=TTTCCCTTCCCCACTGTAGTGGGAGAGAAGGGAGTGGCCATACCATATTTTTCTCGTGGGCCGTTGTAGTCATAAGGCCTTCCTTTGCGGAAAATTTTCAGGGTGGGATA&amp;type=translated%20DNA&amp;db=hg38&amp;output=json">https://genome.ucsc.edu/cgi-bin/hgBlat?userSeq=TTTCCCTTCCCCACTGTAGTGGGAGAGAAGGGAGTGGCCATACCATATTTTTCTCGTGGGCCGTTGTAGTCATAAGGCCTTCCTTTGCGGAAAATTTTCAGGGTGGGATA&amp;type=translated%20DNA&amp;db=hg38&amp;output=json</a>
 </pre>
 
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