0fbae462668c02e6d669f8687043cd5dd8a4f5fa lrnassar Tue Apr 12 11:02:57 2022 -0700 Staging T2T announcement refs #29203 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 1bd663a..481736a 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,31 +39,31 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2006">2006 News</a></li> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2001">2001</a>-<a href="#2002">2002 News</a></li> </ul> </div> </div> </div> <!-- ============= 2022 archived news ============= --> <a name="2022"></a> -<!-- + <a name="041222"></a> <h2>Apr. 12, 2022 T2T CHM13 v2.0 now available in the Genome Browser</h2> <p> The Genome Browser has a <a href="/goldenPath/history.html">rich history</a> intricately connected to human genomic research. We have provided display to almost two dozen human genomes beginning with the first drafts in the year 2000. Nearly 22 years later, the <a href="https://sites.google.com/ucsc.edu/t2tworkinggroup" target="_blank">T2T consortium</a> has published the most complete human haploid genome sequence to date, having added just about all of the 200 million bases (8%) missing from the current reference. We are proud of all the scientists involved, including our colleagues in the <a href="https://genomics.ucsc.edu/" target="_blank">UCSC Genomics Institute</a>, that played a role in this release. We strive to facilitate omics research and thus would like to announce our expanded support for the <a href="/cgi-bin/hgTracks?hubUrl=https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt&genome=GCA_009914755.4&position=lastDbPos" target="_blank">T2T-CHM13 v2.0 browser</a>.</p> @@ -222,31 +222,31 @@ <p> All liftOver files, including files to/from hg19/hg38 and CHM13 can also be found on our download server: <a href="https://hgdownload.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/liftOver/" target="_blank">https://hgdownload.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/liftOver/</a></p> <h3>Acknowledgements</h3> <p> We would like to thank the <a href="https://sites.google.com/ucsc.edu/t2tworkinggroup" target="_blank">T2T Consortium</a> for this landmark accomplishment. We would like to extend an additional kudos to our fellow <a href="https://genomics.ucsc.edu/" target="_blank">UCSC Genomics Institute</a> members who are part of the consortium, Karen Miga, Benedict Paten, Kishwar Shafin, Mark Diekhans, and Miten Jain. Lastly, to the engineers and QA members of the Genome Browser for the rapid development and release of CHM13 data and features.</p> ---> + <a name="041122"></a> <h2>Apr. 11, 2022 CRISPR Targets for Cow (bosTau9) now available</h2> <p> We are happy to announce the release of the the <a href="/cgi-bin/hgTrackUi?db=bosTau9&c=chr6&g=crisprAllTargets">CRISPR Targets</a> track for the cow assembly (<a href="/cgi-bin/hgGateway?db=bosTau9">ARS-UCD1.2/bosTau9</a>). </p> <p> The track "CRISPR Targets" shows all potential -NGG target sites across the genome. CRISPR target sites were annotated with predicted specificity (off-target effects) and predicted efficiency (on-target cleavage) by various algorithms through the tool <a href="http://crispor.tefor.net/" target="_blank">CRISPOR</a>. The target sequence of the guide is shown with a thick (exon) bar. The PAM motif match (NGG) is shown with a thinner bar. Guides are colored to reflect both predicted specificity and efficiency.