3156052e96ed19457d1930d202568d1586803ceb lrnassar Thu Apr 14 15:00:29 2022 -0700 Missing quot from feedback from CR refs #29246 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 2dee413..fc485c5 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -268,31 +268,31 @@ It is worth noting that GenArk assemblies are functionally hubs, which means all data is stored in binary files, not MySQL databases. If your existing data pipelines do not work because our data formats have changed compared to hg19/hg38, please do not hesitate to contact us. Most formats are very similar to the MySQL tables and we have command line tools that can perform the conversions.</p> <h3>Where to download CHM13 data?</h3> <p> All GenArk hubs are hosted on our download server. This means that all settings information and data for displaying this browser can be found there: <a href="https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/" target="_blank">https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/</a></p> <p> We also provide FASTA files there with two different sequence identifiers (the "chr1" format and Genbank accessions), gene annotations in GFF and other -formats and assembly indexes with either Genbank or "chr1" sequence names for the +formats and assembly indexes with either Genbank or "chr1" sequence names for the aligners bwa-mem2, bowtie2, hisat2 and minimap2. Detailed download instructions can be found in the README and on our <a href="https://genome.ucsc.edu/cgi-bin/hgGateway?db=hub_3267197_GCA_009914755.4" target="_blank">assembly description page</a></p> <p> All liftOver files, including files to/from hg19/hg38 and CHM13 can also be found on our download server: <a href="https://hgdownload.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/liftOver/" target="_blank">https://hgdownload.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/liftOver/</a></p> <h3>Acknowledgements</h3> <p> We would like to thank the <a href="https://sites.google.com/ucsc.edu/t2tworkinggroup" target="_blank">T2T Consortium</a> for this landmark accomplishment. We would like to extend an additional kudos to our fellow <a href="https://genomics.ucsc.edu/"