c44506b985f933067aed6688d2470dd7d577833c
markd
  Thu Apr 14 12:20:08 2022 -0700
use hubCheck -checkSettings and remove invalid settings

diff --git src/hg/makeDb/doc/chm13v2.0/makefile src/hg/makeDb/doc/chm13v2.0/makefile
index 1ac7ed8..c6be334 100644
--- src/hg/makeDb/doc/chm13v2.0/makefile
+++ src/hg/makeDb/doc/chm13v2.0/makefile
@@ -48,31 +48,31 @@
 	make stageFiles
 	make test
 
 # 	@printf "# %s %s\n" "$*" "${stageDir}"
 
 stageFiles: $(htmlFiles:%=%stageFiles)
 %stageFiles:
 	@rm -f "${stageDir}/$*"
 	@cp --remove-destination -p "$*" "${stageDir}/$*"
 
 # verify the hub is functioning OK on hgwdev/genome-test from hgdownload-test
 # can't yet use -checkSettings with hubCheck - there are some warnings there
 # that cause this test to fail
 test:
 	@printf "# verify hub is functioning from hgdownload-test.gi.ucsc.edu\n"
-	hubCheck "https://hgdownload-test.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt"
+	hubCheck -checkSettings "https://hgdownload-test.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt"
 	@printf "hubCheck OK\n"
 	@printf "track count: %d tracks via API list tracks\n" "`curl -L "https://genome-test.gi.ucsc.edu/list/tracks?genome=GCA_009914755.4;trackLeavesOnly=1;hubUrl=https://hgdownload-test.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt"  2> /dev/null | python -mjson.tool | egrep ": {$$"  | tr -d '"' | sed -e 's/^ \+//; s/ {//;' | xargs echo | wc -w`"
 	@printf "should be more than 70 tracks\n"
 
 
 # verify the hub is functioning OK from hgdownload.soe.ucsc.edu
 verify:
 	@printf "# verify hub is functioning from hgdownload.soe.ucsc.edu\n"
 	hubCheck "https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt"
 	@printf "hubCheck OK\n"
 	@printf "track count: %d tracks via API list tracks\n" "`curl -L "https://apibeta.soe.ucsc.edu/list/tracks?genome=GCA_009914755.4;trackLeavesOnly=1;hubUrl=https://hgdownload-test.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt"  2> /dev/null | python -mjson.tool | egrep ": {$$"  | tr -d '"' | sed -e 's/^ \+//; s/ {//;' | xargs echo | wc -w`"
 	@printf "should be more than 70 tracks\n"
 
 # user must have login permissions as qateam to hgdownload
 verifyLogin: