890098d958d7df3a643b6a0b3589b1bfe4b7f6a0 markd Sun Apr 17 22:37:36 2022 -0700 added microsatellites diff --git src/hg/makeDb/doc/chm13v2.0userData/makefile src/hg/makeDb/doc/chm13v2.0userData/makefile index bb1555f..3f1303e 100644 --- src/hg/makeDb/doc/chm13v2.0userData/makefile +++ src/hg/makeDb/doc/chm13v2.0userData/makefile @@ -6,31 +6,31 @@ asmBuildDir = /hive/data/genomes/asmHubs/genbankBuild/GCA/009/914/755/${asmId} asmStageDir = /hive/data/genomes/asmHubs/GCA/009/914/755/${ncbiAcc} trackDataDir = ${asmBuildDir}/trackData bbiBuildDir = ${asmBuildDir}/bbi htmlStageDir = ${asmStageDir}/html liftOverDataDir = ${asmBuildDir}/liftOver liftOverStageDir = ${asmStageDir}/liftOver geneDataDir = ${trackDataDir}/catLiftOffGenesV1 geneStageDir = ${asmStageDir}/genes stageUrl = https://hgdownload-test.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt userTrackDbFile = ${asmBuildDir}/${asmId}.userTrackDb.txt tracks = proseq rnaseq cytoBandMapped sedefSegDups rdnaModel catLiftOffGenesV1 hgLiftOver \ - censat hgUnique clinVar20220313 gwasSNPs2022-03-08 dbSNP155 + censat hgUnique clinVar20220313 gwasSNPs2022-03-08 dbSNP155 microsatellites # snakes needs chromAlias fix: # hgCactus tracksWithHtml = $(filter-out cytoBandMapped,${tracks}) hgLiftOverFiles = chm13v2-hg19.over.chain.gz chm13v2-hg38.over.chain.gz hg19-chm13v2.over.chain.gz hg38-chm13v2.over.chain.gz catGxfFiles = catLiftOffGenesV1.gff3.gz catLiftOffGenesV1.gtf.gz catLiftOffGenesV1.rna.fa.gz catLiftOffGenesV1.protein.fa.gz .SECONDARY: MAKEFLAGS += --check-symlink-times all: ${userTrackDbFile} bbiInstall htmlInstall liftOverInstall geneInstall hubCheck -checkSettings ${stageUrl}