c44506b985f933067aed6688d2470dd7d577833c
markd
  Thu Apr 14 12:20:08 2022 -0700
use hubCheck -checkSettings and remove invalid settings

diff --git src/hg/makeDb/doc/chm13v2.0userData/makefile src/hg/makeDb/doc/chm13v2.0userData/makefile
index f49914c..e5d2661 100644
--- src/hg/makeDb/doc/chm13v2.0userData/makefile
+++ src/hg/makeDb/doc/chm13v2.0userData/makefile
@@ -22,31 +22,31 @@
          censat hgUnique clinVar20220313 gwasSNPs2022-03-08 dbSNP155
 
 # snakes needs chromAlias fix:
 # hgCactus
 
 tracksWithHtml = $(filter-out cytoBandMapped,${tracks})
 
 hgLiftOverFiles = chm13v2-hg19.over.chain.gz chm13v2-hg38.over.chain.gz hg19-chm13v2.over.chain.gz hg38-chm13v2.over.chain.gz
 
 catGxfFiles = catLiftOffGenesV1.gff3.gz catLiftOffGenesV1.gtf.gz catLiftOffGenesV1.rna.fa.gz catLiftOffGenesV1.protein.fa.gz
 
 .SECONDARY:
 MAKEFLAGS += --check-symlink-times
 
 all: ${userTrackDbFile} bbiInstall htmlInstall liftOverInstall geneInstall
-	hubCheck ${stageUrl}
+	hubCheck -checkSettings ${stageUrl}
 
 # ensure spaces separate the stanzas
 ${userTrackDbFile}: ${tracks:%=trackDb/%.trackDb.txt}
 	awk 'FNR==1{print ""} {print $$0}'  $^ > $@
 
 # make bbi links for directories
 .PHONY: bbiInstall bbiInstall_%
 bbiInstall: ${tracks:%=${bbiBuildDir}/${asmId}.%}
 
 # create symlink if it doesn't exist
 ${bbiBuildDir}/${asmId}.%:
 	ln -sf ../trackData/$* ${bbiBuildDir}/${asmId}.$*
 
 # copy HTML to build and link to the stage dir
 .PHONY: htmlInstall