Commits for braney

v431_preview2 to v431_base (2022-05-09 to 2022-05-16) v431

ae55889347291dda796b9803256399158f3c82fa Mon May 9 16:22:24 2022 -0700

• add a test of Michael Hillers 483-way
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 10, context: html, text, full: html, text

6a9336c9f65f85b7d9fdcb8627995d2d4d9c06ed Tue May 10 17:51:54 2022 -0700

• a little script to be called in trackDb makefile to make an assembly hub from a trackDb
  • src/hg/makeDb/trackDb/maybeBuildHub - lines changed 17, context: html, text, full: html, text

4e8f4786b04d81ae75cab0f10412847cbcf1aa6a Wed May 11 10:30:41 2022 -0700

• change fieldedTable to require the same number of tab separated fields on every line.
  • src/lib/fieldedTable.c - lines changed 5, context: html, text, full: html, text

b94993d07e5d0ef24f17a40c9ca7f5b2ddb93701 Wed May 11 10:50:56 2022 -0700

• allow hubs to specify a naming authority for the chromosome that's displayed by the browser
  • src/hg/hgTracks/hgTracks.c - lines changed 10, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/chromAlias.h - lines changed 5, context: html, text, full: html, text
  • src/hg/inc/trackHub.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/chromAlias.c - lines changed 96, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 1, context: html, text, full: html, text

c13ed07bb8cf97ee53a45a91da18910edbc525d9 Fri May 13 13:46:20 2022 -0700

• support chromAuthority with bigBed chromAlias files
  • src/hg/lib/chromAlias.c - lines changed 11, context: html, text, full: html, text
  • src/lib/bbiAlias.c - lines changed 1, context: html, text, full: html, text

c2a39bfb5cbc74bc5a655c89f5162d38ac59a3f1 Sun May 15 14:15:19 2022 -0700

• GENCODE V41 in da house!
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneV41.html - lines changed 140, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

dccdda7ba389a2897bd3721de5f45335c5c7cd0b Sun May 15 14:29:43 2022 -0700

• set up archive for V39
  • src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra - lines changed 25, context: html, text, full: html, text