ce5eff33ee510ad5dd99477ba0b11e2d9168505e brianlee Sat May 14 06:59:36 2022 -0700 Updating other doc references to resetting browser diff --git src/hg/htdocs/goldenPath/help/hgGenomeHelp.html src/hg/htdocs/goldenPath/help/hgGenomeHelp.html index f2dc833..1c6bf76 100755 --- src/hg/htdocs/goldenPath/help/hgGenomeHelp.html +++ src/hg/htdocs/goldenPath/help/hgGenomeHelp.html @@ -456,32 +456,32 @@ threshold. Please note that if you are displaying more than one graph in Genome Graphs, the significant genes are based only on the first graph in the display list.</p> <p> If the graph was uploaded using markers, then a custom Gene Sorter column with the same name as the graph will be created. This column will list all markers for each gene that contain values above the significance threshold.</p> <!-- Deleting Data --> <a name="DataSets"></a> <h2>Deleting data</h2> <p> There are several ways to delete your data once it has been uploaded. If you are viewing your data as a track in the Genome Browser, you can click on the mini-button or track control for the track and delete the track using the <strong>Remove custom track</strong> button. You can also choose to reset your cart which will reset the browser interface settings to their defaults, as well as delete -all custom tracks and data. Do this by visiting the gateway page and clicking the hyper link: -"Click here to reset".</p> +all custom tracks and data. Do this by clicking the "Reset All User Settings" +under the top blue Genome Browser menu.</p> <p> Your data will be saved on our server for at least 48 hours from the time you last access it, unless it is saved in a <a href="/goldenPath/help/hgSessionHelp.html#CTs">Session</a>.</p> <!-- Correlating Data --> <a name="Correlate"></a> <h2>Correlating data sets</h2> <p> To calculate how well correlated with one another your data sets are, click the <strong>correlate</strong> button. This will calculate and display the correlation coefficient (<strong>R</strong>) among each of your data sets. <strong>R</strong>, also known as Pearson's correlation coefficient, is a measure of the extent that two graphs move together. The value of <strong>R</strong> ranges between -1 and 1. A positive <strong>R</strong> indicates that the graphs tend to move in the same direction, while a negative <strong>R</strong> indicates that they tend to move in opposite directions. <strong>R-Squared</strong> (which is indeed just <strong>R*R</strong>)