Commits for lrnassar

v431_preview2 to v431_base (2022-05-09 to 2022-05-16) v431

d8df38ba4671d2f98771343bb695cbf49e38bde8 Mon May 9 16:35:30 2022 -0700

• Adding MTR track refs #29152
  • src/hg/makeDb/doc/hg19.txt - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/scripts/mtr/buildMTRbedTrack.py - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/scripts/mtr/buildMTRwigTracks.py - lines changed 68, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/constraintSuper.html - lines changed 76, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/constraintSuper.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/mtr.ra - lines changed 75, context: html, text, full: html, text

dbdbe5dc1eda031e2e3be1ecf8f8db8e91b8b863 Mon May 9 16:37:38 2022 -0700

• Fixing small typo
  • src/hg/makeDb/trackDb/human/mtr.ra - lines changed 1, context: html, text, full: html, text

c4d51681dcec644ccffb54d40b0ec94e00eb532d Wed May 11 12:27:15 2022 -0700

• Staging new GENCODE release, refs #29275 #29276 #29277
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV39lift37.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV39.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM28.ra - lines changed 1, context: html, text, full: html, text

daae75ac0c06304b50a86599f7c7cba7b336cdbf Wed May 11 12:29:37 2022 -0700

• Fixing a bad paste command, refs #29275 #29276 #29277
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 4, context: html, text, full: html, text

3b9576331b05c510b9509f66090a25d9582a0219 Wed May 11 13:53:06 2022 -0700

• Releasing new GENCODE release, refs #29275 #29276 #29277
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 36, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text

e2b40d37a4575d5df1665e85214a387050a1f094 Thu May 12 14:40:19 2022 -0700

• Building gnomAD pLI track on hg38 (prev only on hg19) refs #29358
  • src/hg/makeDb/doc/hg38/gnomadPLI.txt - lines changed 42, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 88, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomadPLI.html - lines changed 232, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomadV3_1_1.html - lines changed 4, context: html, text, full: html, text

8f32273ebe555d15ba642587d79ee7f20c5e2881 Fri May 13 11:58:05 2022 -0700

• Reactivating DECIPHER otto, Jonathan has fixed the automatic data fetching. Refs #29130
  • src/hg/utils/otto/otto.crontab - lines changed 2, context: html, text, full: html, text