05a3d177bf35df451f750276c274efc25b8acc70 markd Fri May 13 14:28:34 2022 -0700 import of gencode VM30 pre-release diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt index e805e62..332d354 100644 --- src/hg/makeDb/doc/hg38/gencode.txt +++ src/hg/makeDb/doc/hg38/gencode.txt @@ -1028,30 +1028,30 @@ # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions # download, build and load tables mkdir -p /hive/data/genomes/hg38/bed/gencodeV41/hgcImportPre pushd /hive/data/genomes/hg38/bed/gencodeV41/hgcImportPre (time nice make -O -j 32 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 41 107 'June 2022' - # edit human/hg38/trackDb.gencode.ra to add new .ra file include, as alpha + # edit human/hg38/trackDb.gencode.ra to add new .ra file include as alpha # edit all.joiner to add ~/tmp/gencodeV41.joiner jkmake DBS=hg38 # check joiner pushd /hive/data/genomes/hg38/bed/gencodeV41/hgcImportPre make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # check tracks in browser sandbox # commit all jkmake DBS=hg38 alpha #########################################################################