020ce5ad874fab8928c2e66b832c52708e7125f1
max
  Fri May 13 04:16:32 2022 -0700
forgot to change the cnv track, refs #29216

diff --git src/hg/makeDb/trackDb/human/trackDb.clinvar.ra src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
index bee483c..7c61f94 100644
--- src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
+++ src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
@@ -41,31 +41,31 @@
 
         track clinvarCnv
         parent clinvar
         shortLabel ClinVar CNVs
         longLabel ClinVar Copy Number Variants >= 50bp
         visibility hide
         type bigBed 12 +
         itemRgb on
         group phenDis
         priority 2
         # note that you cannot change these values. Old carts will contain them. If you must change these, you'll have to rename
         # the field, which will reset the cart variables. Or use the cart rewrite mechanism. You can add more values, though
         filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown
         filterType._originCode multiple
         filterLabel._originCode Alelle Origin
-        filterValues._allTypeCode INS|insertion - INS,DEL|deletion - DEL,INDEL|insertion-deletion - INDEL,dupl|duplication - DUPL,OTH|other - OTH
+        filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN
         filterType._allTypeCode multiple
         filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
         filterType._clinSignCode multiple
         filter._varLen 50:999999999
         filterByRange._varLen on
         filterLimits._varLen 50:999999999
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/bbi/clinvar/clinvarCnv.bb
         mergeSpannedItems on
         urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
         noScoreFilter on
         searchIndex _dbVarSsvId
 
         track clinvarSubLolly
         parent clinvar