6755fa51ff1f0cb330fc3e5096f2f0ec13814ebc braney Mon Apr 25 15:12:24 2022 -0700 allow '#' in chrom names diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c index 2a6ea59..237815e 100644 --- src/hg/hgc/hgc.c +++ src/hg/hgc/hgc.c @@ -722,47 +722,47 @@ if (tableFormat) printf("<TR><TH ALIGN=left>Bands:</TH><TD>%s - %s</TD></TR>\n",sband, eband); else printf("<B>Bands:</B> %s - %s<BR>\n", sband, eband); } void printPosOnChrom(char *chrom, int start, int end, char *strand, boolean featDna, char *item) /* Print position lines referenced to chromosome. Strand argument may be NULL */ { printf("<B>Position:</B> " "<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\">", - hgTracksPathAndSettings(), database, chrom, start+1, end); + hgTracksPathAndSettings(), database, cgiEncode(chrom), start+1, end); printf("%s:%d-%d</A><BR>\n", chrom, start+1, end); /* printBand(chrom, (start + end)/2, 0, FALSE); */ printBand(chrom, start, end, FALSE); printf("<B>Genomic Size:</B> %d<BR>\n", end - start); if (strand != NULL && differentString(strand,".") && isNotEmpty(strand)) printf("<B>Strand:</B> %s<BR>\n", strand); else strand = "?"; if (featDna && end > start) { char *tbl = cgiUsualString("table", cgiString("g")); strand = cgiEncode(strand); printf("<A HREF=\"%s&o=%d&g=getDna&i=%s&c=%s&l=%d&r=%d&strand=%s&table=%s\">" "View DNA for this feature</A> (%s/%s)<BR>\n", hgcPathAndSettings(), start, (item != NULL ? cgiEncode(item) : ""), - chrom, start, end, strand, tbl, trackHubSkipHubName(database), trackHubSkipHubName(hGenome(database))); + cgiEncode(chrom), start, end, strand, tbl, trackHubSkipHubName(database), trackHubSkipHubName(hGenome(database))); } } void printPosOnScaffold(char *chrom, int start, int end, char *strand) /* Print position lines referenced to scaffold. 'strand' argument may be null. */ { char *scaffoldName; int scaffoldStart, scaffoldEnd; if (!hScaffoldPos(database, chrom, start, end, &scaffoldName, &scaffoldStart, &scaffoldEnd)) { printPosOnChrom(chrom, start,end,strand, FALSE, NULL); return; } printf("<B>Scaffold:</B> %s<BR>\n", scaffoldName);