44ccfacbe3a3d4b300f80d48651c77837a4b571e
galt
  Tue Apr 26 11:12:02 2022 -0700
SQL INJECTION Prevention Version 2 - this improves our methods by making subclauses of SQL that get passed around be both easy and correct to use. The way that was achieved was by getting rid of the obscure and not well used functions sqlSafefFrag and sqlDyStringPrintfFrag and replacing them with the plain versions of those functions, since these are not needed anymore. The new version checks for NOSQLINJ in unquoted %-s which is used to include SQL clauses, and will give an error the NOSQLINJ clause is not present, and this will automatically require the correct behavior by developers. sqlDyStringPrint is a very useful function, however because it was not enforced, users could use various other dyString functions and they operated without any awareness or checking for SQL correct use. Now those dyString functions are prohibited and it will produce an error if you try to use a dyString function on a SQL string, which is simply detected by the presence of the NOSQLINJ prefix.

diff --git src/lib/tests/mimeTester.c src/lib/tests/mimeTester.c
index ef004f4..4433066 100644
--- src/lib/tests/mimeTester.c
+++ src/lib/tests/mimeTester.c
@@ -1,320 +1,320 @@
 /* mimeTester - test program for mime parser */
 
 /* Copyright (C) 2011 The Regents of the University of California 
  * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "options.h"
 #include "pipeline.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "mime.h"
 extern char **environ;
 
 
 char *altHeader = NULL;
 
 void usage(char *msg)
 /* Explain usage and exit. */
 {
 errAbort(
     "%s\n\n"
     "mimeTester - test program for mime parser\n"
     "\n"
     "Usage:\n"
     "   mimeTester [options]\n"
     "Options:\n"
     "  -altHeader='CONTENT_TYPE=\"multipart/form-data, boundary=AaB03x\"'\n"
     "    be sure to specify the same boundary pattern that is used \n"
     "    in the stdin input.\n"
     "  -autoBoundary - no boundary given, scan for --.\n"
     "  -sizeSeries=n - run a series of mime messages to parse of increasing size\n"
     "    with dna field size 0 to n\n"
     "  --help - this help screen\n",
     msg);
 }
 
 int sizeSeries = -1;
 
 static struct optionSpec options[] =
 {
     {"altHeader", OPTION_STRING},
     {"autoBoundary", OPTION_BOOLEAN},
     {"sizeSeries", OPTION_INT},
     {"-help", OPTION_BOOLEAN},
     {NULL, 0},
 };
 
 
 
 void printMimeInfo(struct mimePart *mp, FILE *out, int level)
 /* print mimeParts recursively if needed */
 {
 
 char *cd = NULL, *cdMain = NULL, *cdName = NULL, *cdFileName = NULL, 
  *ct = NULL, *ce = NULL;
 char *margin = needMem(level+1);
 int i = 0;
 for(i=0;i<level;++i)
     margin[i] = ' ';
 margin[level] = 0;    
 
 
 cd = hashFindVal(mp->hdr,"content-disposition");
 ct = hashFindVal(mp->hdr,"content-type");
 ce = hashFindVal(mp->hdr,"content-transfer-encoding");
 
 if (cd)
     {
     fprintf(out,"%scontent-disposition: %s\n",margin,cd);
     cdMain=getMimeHeaderMainVal(cd);
     cdName=getMimeHeaderFieldVal(cd,"name");
     fprintf(out,"%smain:[%s]\n",margin,cdMain);
     fprintf(out,"%sname:[%s]\n",margin,cdName);
     cdFileName=getMimeHeaderFieldVal(cd,"filename");
     if (cdFileName)
     	fprintf(out,"%sfilename:[%s]\n",margin,cdFileName);
     }
 if (ct)
     fprintf(out,"%scontent-type: %s\n",margin,ct);
 if (ce)
     fprintf(out,"%scontent-transer-encoding: %s\n",margin,ce);
 
 if (cd)
     {
     fprintf(out,"%ssize:[%llu]\n",margin,(unsigned long long) mp->size);
     if (mp->binary)
     	fprintf(out,"%sbinary (contains zeros)\n",margin);
     if (mp->fileName)
 	fprintf(out,"%sfileName=[%s]\n",margin, mp->fileName);
     fprintf(out,"%sdata:[%s]\n",margin,
     	mp->binary && mp->data ? "<binary data not safe to print>" : mp->data);
     fprintf(out,"\n");
     }
 
 if (mp->data) 
     {
     }	    
 else if (mp->fileName)
     {
     }
 else if (mp->multi)
     {
     fprintf(out,"%snested MIME structure\n\n",margin);
     for(mp=mp->multi;mp;mp=mp->next)
 	printMimeInfo(mp, out, level+1);
     }
 else
     {
     errAbort("mp-> type not data,fileName, or multi - unexpected MIME structure");
     }
 
 freez(&cdMain);
 freez(&cdName);
 freez(&cdFileName);
 freez(&margin);
 
 }
 
 
 
 
 static struct mimePart * cgiParseMultipart(int fd, FILE *out, boolean autoBoundary)
 /* process a multipart form */
 {
 char h[1024];  /* hold mime header line */
 char *s = NULL;
-struct dyString *dy = newDyString(256);
+struct dyString *dy = dyStringNew(256);
 struct mimeBuf *mb = NULL;
 struct mimePart *mp = NULL;
 char **env = NULL;
 
 if (altHeader)
     {
     /* find the CONTENT_ environment strings, use to make Alternate Header string for MIME */
     for(env=environ; *env; env++)
 	if (startsWith("CONTENT_",*env))
 	    {
 	    //debug
 	    //fprintf(stderr,"%s\n",*env);  //debug
 	    safef(h,sizeof(h),"%s",*env);
 	    /* change env syntax to MIME style header, from _ to - */
 	    s = strchr(h,'_');    
 	    if (!s)
 		errAbort("expecting '_' parsing env var %s for MIME alt header", *env);
 	    *s = '-';
 	    /* change env syntax to MIME style header, from = to : */
 	    s = strchr(h,'=');
 	    if (!s)
 		errAbort("expecting '=' parsing env var %s for MIME alt header", *env);
 	    *s = ':';
 	    dyStringPrintf(dy,"%s\r\n",h);
 	    }
     dyStringAppend(dy,"\r\n"); /* blank line at end means end of headers */
     fprintf(out,"Alternate Header Text:\n%s",dy->string);
     }
 
 mb = initMimeBuf(fd);
 
 if (altHeader)
     mp = parseMultiParts(mb, cloneString(dy->string)); /* The Alternate Header will get freed */
 else if (autoBoundary)    
     mp = parseMultiParts(mb, "autoBoundary"); 
 else    
     mp = parseMultiParts(mb, NULL); 
 
 if(!mp->multi) /* expecting multipart child parts */
     errAbort("Malformatted multipart-form.");
 
-freeDyString(&dy);
+dyStringFree(&dy);
 
 freez(&mb);
 
 
 printMimeInfo(mp, out, 0);
 
 return mp;
 }
 
 
 static void freeMimeParts(struct mimePart **pMp)
 /* free struct mimePart* recursively if needed */
 {
 struct mimePart *next = NULL, *mp = *pMp; 
 
 while (mp)
     {
     next = mp->next;
     if (mp->multi)
 	freeMimeParts(&mp->multi);
     freeHashAndVals(&mp->hdr);
     freez(&mp->data);
     freez(&mp->fileName);
     freez(pMp);
     mp = next;
     pMp = &mp;
     }
 
 }
 
 #define TESTFILENAME "mimeTester.tmp"
 #define TESTFILEOUT "mimeTester.out"
 
 static void makeTestFile(int size)
 /* make a tmp test file as input to mime parser */
 {
 int i = 0;
 FILE *f = mustOpen(TESTFILENAME,"w");
 char *dna = NULL;
 fprintf(f,"%s",
 "Content-type: multipart/form-data; boundary=----------0xKhTmLbOuNdArY\r\n"
 "\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"hgsid\"\r\n"
 "\r\n"
 "63932244\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"org\"\r\n"
 "\r\n"
 "Human\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"db\"\r\n"
 "\r\n"
 "hg17\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"type\"\r\n"
 "\r\n"
 "BLAT's guess\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"sort\"\r\n"
 "\r\n"
 "query,score\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"output\"\r\n"
 "\r\n"
 "hyperlink\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"userSeq\"\r\n"
 "\r\n"
 ">NM_000230 (LEP)\n"
 );
 
 dna = needMem(size+1);
 for(i=0;i<size;++i)
     {
     dna[i] = 'A';
     }
 dna[size] = 0;    
 fprintf(f,"%s",dna);
 freez(&dna);
 
 fprintf(f,"%s",
 "\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"Submit\"\r\n"
 "\r\n"
 "Submit\r\n"
 "------------0xKhTmLbOuNdArY\r\n"
 "Content-Disposition: form-data; name=\"seqFile\"; filename=\"\"\r\n"
 "\r\n"
 "\r\n"
 "------------0xKhTmLbOuNdArY--\r\n"
 );
 
 carefulClose(&f);
 }
 
 
 static void doSizeSeries()
 /* test a range of increasing sizes for the mime parser */
 {
 int fd = -1;
 FILE *out = NULL;
 struct mimePart *mp = NULL; 
 int i = 0;
 for (i=0;i<sizeSeries;++i)
     {
     out = mustOpen(TESTFILEOUT, "w");
     makeTestFile(i);
     fd = open(TESTFILENAME, O_RDONLY);
     mp = cgiParseMultipart(fd, out, FALSE);
     fprintf(stderr,"ouput %d ok\n",i);
     close(fd);
     fd = -1;
     carefulClose(&out);
     freeMimeParts(&mp);
     }
 }
 
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 1)
     usage("wrong number of args");
 if (optionExists("-help"))
     usage("help");
 if (optionExists("altHeader") && optionExists("sizeSeries"))
     usage("-altHeader and -sizeSeries may not be used together");
 if (optionExists("altHeader") && optionExists("autoBoundary"))
     usage("-altHeader and -autoBoundary may not be used together");
 if (optionExists("autoBoundary") && optionExists("sizeSeries"))
     usage("-autoBoundary and -sizeSeries may not be used together");
 altHeader  = optionVal("altHeader",altHeader);
 sizeSeries = optionInt("sizeSeries",sizeSeries);
 
 if (altHeader)
     putenv(altHeader);
 
 if (optionExists("sizeSeries"))
     {
     doSizeSeries();
     }
 else    
     {
     struct mimePart *mp = cgiParseMultipart(STDIN_FILENO, stdout, optionExists("autoBoundary"));
     freeMimeParts(&mp);
     }
 
 return 0;
 }