1802824810588f284a6c26d25ab1123070688a65
lrnassar
  Thu Apr 28 15:03:16 2022 -0700
Adding ref/alt info after fixing overlapping entries in EVA tracks, refs #29031

diff --git src/hg/makeDb/trackDb/trackDb.ra src/hg/makeDb/trackDb/trackDb.ra
index 1dcdd4a..5c0006d 100644
--- src/hg/makeDb/trackDb/trackDb.ra
+++ src/hg/makeDb/trackDb/trackDb.ra
@@ -3034,31 +3034,31 @@
 
 track tantan
 shortLabel tantan Repeats
 longLabel Repeats by tantan
 group varRep
 visibility hide
 type bed 3 .
 
 track evaSnp
 shortLabel EVA SNP Release 3
 longLabel Short Genetic Variants from European Variant Archive Release 3
 type bigBed 9 +
 group varRep
 visibility dense
 itemRgb on
-mouseOver $ucscClass $aaChange
+mouseOver $ref>$alt $ucscClass $aaChange
 bigDataUrl /gbdb/$D/bbi/evaSnp.bb
 url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 pennantIcon New red ../goldenPath/newsarch.html#042222 "Released at UCSC April 22, 2022"
 
 searchTable evaSnp
 searchType bigBed