d77f68cb2aedf8aa2a4951671d9fd391b2eab153
markd
  Mon Apr 25 22:17:21 2022 -0700
added SGDP copy number tracks

diff --git src/hg/makeDb/doc/chm13v2.0userData/makefile src/hg/makeDb/doc/chm13v2.0userData/makefile
index 88fe450..64d8eb3 100644
--- src/hg/makeDb/doc/chm13v2.0userData/makefile
+++ src/hg/makeDb/doc/chm13v2.0userData/makefile
@@ -6,31 +6,32 @@
 asmBuildDir = /hive/data/genomes/asmHubs/genbankBuild/GCA/009/914/755/${asmId}
 asmStageDir = /hive/data/genomes/asmHubs/GCA/009/914/755/${ncbiAcc}
 trackDataDir = ${asmBuildDir}/trackData
 bbiBuildDir = ${asmBuildDir}/bbi
 htmlStageDir = ${asmStageDir}/html
 liftOverDataDir = ${asmBuildDir}/liftOver
 liftOverStageDir = ${asmStageDir}/liftOver
 geneDataDir = ${trackDataDir}/catLiftOffGenesV1
 geneStageDir = ${asmStageDir}/genes
 
 stageUrl = https://hgdownload-test.gi.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/hub.txt
 
 userTrackDbFile = ${asmBuildDir}/${asmId}.userTrackDb.txt
 
 tracks = proseq rnaseq cytoBandMapped sedefSegDups rdnaModel catLiftOffGenesV1 hgLiftOver \
-         censat hgUnique clinVar20220313 gwasSNPs2022-03-08 dbSNP155 microsatellites
+         censat hgUnique clinVar20220313 gwasSNPs2022-03-08 dbSNP155 microsatellites \
+         sgdpCopyNumber
 
 # snakes needs chromAlias fix:
 # hgCactus
 
 tracksWithHtml = $(filter-out cytoBandMapped,${tracks})
 
 hgLiftOverFiles = chm13v2-hg19.over.chain.gz chm13v2-hg38.over.chain.gz hg19-chm13v2.over.chain.gz hg38-chm13v2.over.chain.gz
 
 catGxfFiles = catLiftOffGenesV1.gff3.gz catLiftOffGenesV1.gtf.gz catLiftOffGenesV1.rna.fa.gz catLiftOffGenesV1.protein.fa.gz
 
 .SECONDARY:
 MAKEFLAGS += --check-symlink-times
 
 #  not hubCheck -checkSettings currently has false positives, so not using
 all: ${userTrackDbFile} bbiInstall htmlInstall liftOverInstall geneInstall