df27ff9b4c8c6b68d14208aeafb1413f7d3437da markd Fri Apr 29 09:47:18 2022 -0700 import V40lift37 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 15f967c..f00944f 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -23,32 +23,32 @@ SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## preRelease = no #preRelease = yes #db = hg38 -#db = hg19 -db = mm39 +db = hg19 +#db = mm39 #db = mm10 ifeq (${db},mm10) grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39) grcRefAssembly = GRCm39 ver = M29 prevVer = M28