f485654f4d659e942229c0af82a1d78339f29362 brianlee Thu May 5 10:04:13 2022 -0700 Adding an anchor to bigMaf.html about frames summary supporting files. refs #29372 diff --git src/hg/htdocs/goldenPath/help/bigMaf.html src/hg/htdocs/goldenPath/help/bigMaf.html index 3d5de5e..8775d0a 100755 --- src/hg/htdocs/goldenPath/help/bigMaf.html +++ src/hg/htdocs/goldenPath/help/bigMaf.html @@ -32,31 +32,31 @@ pulled in when the <code>bedToBigBed</code> utility is run with the <code>-as=bigMaf.as</code> option.</p> <h6>bigMaf.as</h6> <pre><code>table bedMaf "Bed3 with MAF block" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" lstring mafBlock; "MAF block" )</code></pre> <p> An example: <code>bedToBigBed -type=bed3+1 -as=bigMaf.as -tab bigMaf.txt hg38.chrom.sizes bigMaf.bb</code></p> -<h3>Supporting <code>frame</code> and <code>summary</code> definitions</h3> +<h3 id="frames_summary">Supporting <code>frame</code> and <code>summary</code> definitions</h3> <p> Alongside the bigMaf file, two other summary and frame bigBeds are created. The following autoSql definition is used to create the first file, pointed to online with <code>summary <url></code>, rather than the standard <code>bigDataUrl <url></code> used with bigMaf. The file <a href="examples/mafSummary.as"><em>mafSummary.as</em></a>, is pulled in when the <code>bedToBigBed</code> utility is run with the <code>-as=mafSummary.as</code> option.</p> <h6>mafSummary.as</h6> <pre><code>table mafSummary "Positions and scores for alignment blocks" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome"