Commits for lrnassar

v431_preview to v431_preview2 (2022-05-02 to 2022-05-09) v431

dfd20baf681696d022a58efdad86db4f0ca3b849 Tue May 3 13:40:13 2022 -0700

• Sqashing old icon, no RM
  • src/hg/htdocs/gtex.html - lines changed 1, context: html, text, full: html, text

754be93f931254dfaf897d382a7b6847a2bbaa39 Tue May 3 14:50:47 2022 -0700

• Adding the updated evaSnp3 pipeline which now includes canFam3 and has better handling of multi-allelic variants. Refs #29031
  • src/hg/makeDb/doc/evaSnp3.txt - lines changed 453, context: html, text, full: html, text

b7a0329dfe82a5f49c4b324627a52871fce5d036 Wed May 4 08:11:21 2022 -0700

• Squashing old pennantIcons, no RM
  • src/hg/makeDb/trackDb/human/hg19/affyArchive.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV39lift37.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/kidneyStewart.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mane.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV39.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/jaspar.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/jaspar.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM28.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 1, context: html, text, full: html, text

153ee6d59e873299185856043a9b4fcd469a95b9 Wed May 4 10:41:35 2022 -0700

• Generalizing the MANE name to now just say Select, and adding a sentence that the track includes the clinical transcripts, no RM. Refs Max,Anna.
  • src/hg/makeDb/trackDb/human/hg38/mane.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/mane.ra - lines changed 2, context: html, text, full: html, text

7db8713edd386c7393b9eed2855389071dcd258e Thu May 5 15:28:56 2022 -0700

• Adding pennantIcon to updated VoC track refs #29375
  • src/hg/makeDb/trackDb/virus/wuhCor1/variantMuts.ra - lines changed 1, context: html, text, full: html, text