fb75f30bb5d7fc58874d8765f209d13934c96276 max Fri May 6 02:59:50 2022 -0700 fixing up HMC track, refs #29153, spent waaaay to much time with this track diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt index 8a433d9..11da77b 100644 --- src/hg/makeDb/doc/hg19.txt +++ src/hg/makeDb/doc/hg19.txt @@ -34817,34 +34817,31 @@ # push these files /gbdb/hg19/bbi/chm13LiftOver/hg19-chm13v2.ncbi-qnames.over.chain.bb /gbdb/hg19/bbi/chm13LiftOver/hg19-chm13v2.ncbi-qnames.over.link.bb /gbdb/hg19/bbi/chm13LiftOver/hg19-chm13v2.over.chain.bb /gbdb/hg19/bbi/chm13LiftOver/hg19-chm13v2.over.link.bb /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/chm13LiftOver/hg19-chm13v2.ncbi-qnames.over.chain.gz /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/chm13LiftOver/hg19-chm13v2.over.chain.gz ############################################################################# # HMC constraint scores, Max Fri Apr 8 08:30:49 PDT 2022 # downloaded V2 from https://zenodo.org/record/6392153#.Yk8KeflBzIU) python ~/kent/src/hg/makeDb/scripts/hmc/hmcToWig.py hg19 -wigToBigWig a.bedGraph ../../chrom.sizes a.bw & -wigToBigWig c.bedGraph ../../chrom.sizes c.bw & -wigToBigWig g.bedGraph ../../chrom.sizes g.bw & -wigToBigWig t.bedGraph ../../chrom.sizes t.bw & +bedGraphToBigWig hmc.wig ../../chrom.sizes hmc.bw ############################################################################# # ReMap refs #28960 (2022-04-12 Gerardo) cd /hive/data/genomes/hg19/bed mkdir reMap cd reMap wget https://remap.univ-amu.fr/storage/public/hubReMap2022/hg19/bigBed/remap2022_all_macs2_hg19_v1_0.bb mv remap2022_all_macs2_hg19_v1_0.bb remap2022.bb wget https://remap.univ-amu.fr/storage/public/hubReMap2022/hg19/bigBed/hg19.bw mv hg19.bw reMapDensity2022.bw cd /gbdb/hg19 mkdir reMap cd reMap ln -s /hive/data/genomes/hg19bed/reMap/reMap2022.bb ln -s /hive/data/genomes/hg19/bed/reMap/reMapDensity2022.bw