61b3317ed3251ea30b5222f9e47aad8cc59745db
max
  Tue May 3 02:09:37 2022 -0700
finally, add RNAplot and dot_static to GBIC, not redmine, email between Jorge and QA. I planned to do this in 2017, but then forgot

diff --git src/product/installer/browserSetup.sh src/product/installer/browserSetup.sh
index 4e4f567..d508f01 100644
--- src/product/installer/browserSetup.sh
+++ src/product/installer/browserSetup.sh
@@ -1476,30 +1476,33 @@
        sed -i "s#gbdbLoc2=http://hgdownload.soe.ucsc.edu/gbdb/#gbdbLoc2=http://hgdownload-euro.soe.ucsc.edu/gbdb/#" $CGIBINDIR/hg.conf
        HGDOWNLOAD=hgdownload-euro.soe.ucsc.edu
     else
        echo genome.ucsc.edu seems to be closer
        echo not modifying $CGIBINDIR/hg.conf
     fi
 
 
     # download the CGIs
     if [[ "$OS" == "OSX" ]]; then
         setupCgiOsx
     else
         # don't download RNAplot, it's a 32bit binary that won't work anywhere anymore but at UCSC
         # this means that hgGene cannot show RNA structures but that's not a big issue
         $RSYNC -avzP --exclude=RNAplot $HGDOWNLOAD::cgi-bin/ $CGIBINDIR/
+        # now add the binaries for dot and RNAplot 
+        $RSYNC -avzP $HGDOWNLOAD::genome/admin/exe/external.x86_64/RNAplot $CGIBINDIR/
+        $RSYNC -avzP $HGDOWNLOAD::genome/admin/exe/external.x86_64/loader/dot_static $CGIBINDIR/loader/
     fi
 
     # download the html docs, exclude some big files on OSX
     rm -rf $APACHEDIR/htdocs/goldenpath
     # try to minimize storage for OSX, mostly laptops
     if [ "$OS" == "OSX" ]; then
             $RSYNC --delete -azP --exclude=training --exclude=ENCODE --exclude=encode --exclude=rosenbloom.pdf --exclude=pubs*.pdf --exclude=*.{bb,bam,bai,bw,gz,2bit} --exclude=goldenpath $HGDOWNLOAD::htdocs/ $HTDOCDIR/
     else
             $RSYNC -avzP --exclude ENCODE/**.pdf $HGDOWNLOAD::htdocs/ $HTDOCDIR/
     fi
     
     # assign all files just downloaded to a valid user. 
     # This also allows apache to write into the trash dir
     chown -R $APACHEUSER:$APACHEUSER $CGIBINDIR $HTDOCDIR $TRASHDIR