27fd1e0b2d3b1df5be807a9405db92fe1479192b
max
  Mon May 9 05:43:38 2022 -0700
fixing up makedoc for jarvis, refs #29154

diff --git src/hg/makeDb/doc/hg38/jarvis.txt src/hg/makeDb/doc/hg38/jarvis.txt
index e9571c9..cf69a29 100644
--- src/hg/makeDb/doc/hg38/jarvis.txt
+++ src/hg/makeDb/doc/hg38/jarvis.txt
@@ -1,8 +1,6 @@
 Jarvis track, Max, 03-28-22
+# downloaded version v1.1 from https://az.app.box.com/v/jarvis-gwrvis-scores/folder/159706242087
+# overlaps were removed and the files are sorted, unlike 1.0
 cd /hive/data/genomes/hg38/bed/jarvis/
-chromToUcsc --get hg38
-zcat orig/*.bed.gz | chromToUcsc -a hg38.chromAlias.tsv -s > jarvis.hg38.bedgraph.ucsc.bed
-# I use a current version of "sort" installed via conda. If using older ones, remove --parallel and --buffer
-time sort -k1,1 -k2,2n  --parallel=10  --buffer=20G jarvis.hg38.bedgraph.ucsc.bed > jarvis.hg38.bedgraph.ucsc.sort.bed
-bedRemoveOverlap jarvis.hg38.bedgraph.ucsc.sort.bed jarvis.hg38.bedgraph.ucsc.nonOvlp.bed
-bedGraphToBigWig jarvis.hg38.bedgraph.ucsc.nonOvlp.bed  ../chrom.sizes jarvis.bw
+zcat `ls -rtd orig/* | sort | grep tsv.gz` | tawk '{print "chr"$1, $2-1, $2, $3}' > jarvis.bedGraph
+bedGraphToBigWig jarvis.bedGraph  ../chrom.sizes jarvis.bw