ce69d691ca993477ded60e556750bea544ae8219 brianlee Mon May 16 15:16:53 2022 -0700 Edit to bigWig.html refs #28499 diff --git src/hg/htdocs/goldenPath/help/bigWig.html src/hg/htdocs/goldenPath/help/bigWig.html index 74f3feb..e4d331c 100755 --- src/hg/htdocs/goldenPath/help/bigWig.html +++ src/hg/htdocs/goldenPath/help/bigWig.html @@ -200,42 +200,42 @@ <li> Move the newly created bigWig file (<code>myBigWig.bw</code>) to a web-accessible http, https, or ftp location.</li> <li> Paste the URL into the custom track entry form or construct a <a href="hgTracksHelp.html#CustomTracks">custom track</a> using a single <a href="hgTracksHelp.html#TRACK">track line</a>.</li> <li> Paste the custom track line into the text box on the <a href="../../cgi-bin/hgCustom">custom track management page</a>.</li> </ol> <a name=dynseq></a> <h3 id=Ex4>Example #4</h3> <p> -In this example, will display a bigWig with a dynamic sequence logo using <code>logo=on</code>.</p> +In this example, we will display a bigWig with a dynamic sequence logo using <code>logo=on</code>.</p> <p> <ol> <li> Construct a track line that references the <em>bigWigExample.bw</em> file: <pre><code>track type=bigWig logo=on name="Example dynaseq" description="A bigWig file with logo=on dynaseq" visibility=full autoScale=off bigDataUrl=http://genome.ucsc.edu/goldenPath/help/examples/bigWigExample.bw</code></pre></li> <li> Include the following browser line to ensure that the custom track opens at the correct position: <pre><code>browser position chr21:33,037,000-33,037,050</code></pre></li> <li> - Paste the browser and track lines onto the <a href="../../cgi-bin/hgCustom">custom track + Paste the browser and track lines onto the <a href="../../cgi-bin/hgCustom?db=hg19">custom track management page</a> for the human assembly hg19 (Feb. 2009), click the "submit" button, then click the "chr21" link in the custom track listing to view the bigWig track in the Genome Browser.</li> </ol> <p> The <a href="https://kundajelab.github.io/dynseq-pages/" target="_blank">dynseq</a> displays nucleotide characters scaled by user-specified, base-resolution scores and was developed by the <a href="https://kundajelab.github.io/about/" target="_blank">Kundaje Lab</a>.</p> <h2>Sharing your data with others</h2> <p> If you would like to share your bigWig data track with a colleague, learn how to create a URL by looking at Example #6 on <a href="customTrack.html#EXAMPLE6">this page</a>.</p>