eb4adbf30d849f0a7301359e0153c0932b2660e6 brianlee Tue May 17 12:10:20 2022 -0700 Fixing dynaseq-> dynseq typo in example custom track text diff --git src/hg/htdocs/goldenPath/help/bigWig.html src/hg/htdocs/goldenPath/help/bigWig.html index 896658e..8e69ca3 100755 --- src/hg/htdocs/goldenPath/help/bigWig.html +++ src/hg/htdocs/goldenPath/help/bigWig.html @@ -205,44 +205,44 @@ <a href="hgTracksHelp.html#CustomTracks">custom track</a> using a single <a href="hgTracksHelp.html#TRACK">track line</a>.</li> <li> Paste the custom track line into the text box on the <a href="../../cgi-bin/hgCustom">custom track management page</a>.</li> </ol> <a name=dynseq></a> <h3 id=Ex4>Example #4</h3> <p> In this example, we will display a bigWig with a dynamic sequence logo using <code>logo=on</code>.</p> <p> <ol> <li> Construct a track line that references the <em>bigWigExample.bw</em> file: - <pre><code>track type=bigWig logo=on name="Example dynaseq" description="A bigWig file with logo=on dynaseq" visibility=full autoScale=off bigDataUrl=http://genome.ucsc.edu/goldenPath/help/examples/bigWigExample.bw</code></pre></li> + <pre><code>track type=bigWig logo=on name="Example dynseq" description="A bigWig file with logo=on dynseq" visibility=full autoScale=off bigDataUrl=http://genome.ucsc.edu/goldenPath/help/examples/bigWigExample.bw</code></pre></li> <li> Include the following browser line to ensure that the custom track opens at the correct position: <pre><code>browser position chr21:33,037,000-33,037,050</code></pre></li> <li> Paste the browser and track lines onto the <a href="../../cgi-bin/hgCustom?db=hg19">custom track management page</a> for the human assembly hg19 (Feb. 2009), click the "submit" button, then click the "chr21" link in the custom track listing to view the bigWig track in the Genome Browser.</li> </ol> <p> You can also load the above by clicking this <a target="_blank" -href="../../cgi-bin/hgTracks?db=hg19&position=chr21:33,037,000-33,037,050&hgct_customText=track%20type%3DbigWig%20logo%3Don%20name%3D%22Example%20dynaseq%22%20description%3D%22A%20bigWig%20file%20with%20logo%3Don%20dynaseq%22%20visibility%3Dfull%20autoScale%3Doff%20bigDataUrl%3Dhttp%3A%2F%2Fgenome.ucsc.edu%2FgoldenPath%2Fhelp%2Fexamples%2FbigWigExample.bw">link</a>.</p> +href="../../cgi-bin/hgTracks?db=hg19&position=chr21:33,037,000-33,037,050&hgct_customText=track%20type%3DbigWig%20logo%3Don%20name%3D%22Example%20dynseq%22%20description%3D%22A%20bigWig%20file%20with%20logo%3Don%20dynseq%22%20visibility%3Dfull%20autoScale%3Doff%20bigDataUrl%3Dhttp%3A%2F%2Fgenome.ucsc.edu%2FgoldenPath%2Fhelp%2Fexamples%2FbigWigExample.bw">link</a>.</p> <div class="text-center"> <img src="../../images/dynseq.png" alt="Example4 of dynseq logo=on setting" width="700"> </div> <p> This <a href="https://kundajelab.github.io/dynseq-pages/" target="_blank">dynseq</a> display scales nucleotide characters by user-specified, base-resolution scores and was developed by the <a href="https://kundajelab.github.io/about/" target="_blank">Kundaje Lab</a>.</p> <h2>Sharing your data with others</h2> <p> If you would like to share your bigWig data track with a colleague, learn how to create a URL by looking at Example #6 on <a href="customTrack.html#EXAMPLE6">this page</a>.</p> <a name="Extract"></a>