05eb41c63af8ccd369f76b022d3cf1faab5543c2 braney Thu May 26 16:25:07 2022 -0700 changes to support curated hubs diff --git src/hg/makeDb/trackDb/loadTracks src/hg/makeDb/trackDb/loadTracks index d6c9616..9a48ee6 100755 --- src/hg/makeDb/trackDb/loadTracks +++ src/hg/makeDb/trackDb/loadTracks @@ -14,30 +14,32 @@ UNAME_N=${UNAME_N/.soe.ucsc.edu/} release='' settings='' local='' strict='' raName='' grpSql='' gbdbList='' sqlDir='../../lib' while [[ $1 == -* ]] ; do case $1 in -release=*) release=$(echo $1 | sed 's/-release=//') ;; -strict) strict=yes;; + -noHtmlCheck) + noHtmlCheck=yes;; -addVersion) addVersion=yes;; -settings) settings="yes";; -raName=*) raName=$(echo $1 | sed 's/-raName=//') ;; -grpSql=*) grpSql=$(echo $1 | sed 's/-grpSql=//') ;; -sqlDir=*) sqlDir=$(echo $1 | sed 's/-sqlDir=//') ;; -gbdbList=*) gbdbList=$(echo $1 | sed 's/-gbdbList=//') ;; *) echo "invalid option: $1" >&2 exit 1 ;; @@ -75,30 +77,33 @@ if [ -f $dbpath/visibility.ra ] ; then topts="$topts -visibility=$dbpath/visibility.ra" elif [ -f $org/visibility.ra ] ; then topts="$topts -visibility=$org/visibility.ra" fi if [ -f $dbpath/priority.ra ] ; then topts="$topts -priority=$dbpath/priority.ra" elif [ -f $org/priority.ra ] ; then topts="$topts -priority=$org/priority.ra" fi if [ -n "$release" ] ; then topts="$topts -release=$release" fopts="$fopts -release=$release" qopts="$qopts -release=$release" fi + if [ -n "$noHtmlCheck" ] ; then + topts="$topts -noHtmlCheck" + fi if [ -n "$addVersion" ] ; then topts="$topts -addVersion" fi if [ -n "$strict" ] ; then topts="$topts -strict" fopts="$fopts -strict" qopts="$qopts -strict" fi if [ -n "$settings" ] ; then topts="$topts -settings" fi if [ -n "$raName" ] ; then topts="$topts -raName=$raName" fopts="$fopts -raName=$raName" fi