97aac8574baeb9f324739745c49500836d0e4264 brianlee Tue May 24 06:47:36 2022 -0700 Adding a newsarch record of the new assembly request page refs #29237 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 352521a..d5d646a 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,58 @@ <div class="col-sm-3"> <ul> <li><a href="#2006">2006 News</a></li> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2001">2001</a>-<a href="#2002">2002 News</a></li> </ul> </div> </div> </div> <!-- ============= 2022 archived news ============= --> <a name="2022"></a> +<a name="052422"></a> +<h2>May 24, 2022 New Assembly Request Page</h2> +<p> +Find the genome of your favorite organism on our new <a href="/assemblyRequest.html" +target="_blank">assembly request</a> page. Click "view" to launch a browser, +or the "request" button to request that we add yours.</p> +<div class="text-center"> + <a href="/assemblyRequest.html"> + <img src="../images/newsArchImages/requestPage.png" alt="New Assembly Request Page" width="700"> + </a> +</div> +<p>Our most recent blog post, +<a href="https://genome-blog.soe.ucsc.edu/blog/2022/04/12/genark-hubs-part-4/" +target="_blank">GenArk Hubs Part 4 - New assembly request page</a> describes how to use this new +feature.</p> +<p> +With the realization that we could not possibly host every single genomic assembly available, +we created <a href="help/hgTrackHubHelp.html#Assembly">Assembly Hubs</a>. Assembly Hubs allow +anyone to host and view the genome of any species in the context of the UCSC Genome Browser. +Last summer we <a href="newsarch.html#060121">announced</a> the creation of the Genome Archive +(GenArk) which included Assembly Hubs for the genomic assemblies of more than 1,300 species. +Since then, we have taken this a step further by creating this new <a href="/assemblyRequest.html" +target="_blank">Assembly Request</a> page that displays about 14,000 assemblies: those that +are available for viewing and those that can be requested. We currently have nearly 1,700 assembly +hubs available for viewing at the click of a button. If you don't see the organism or assembly you +are interested in then please use the page to request it. We will build an Assembly Hub for you +and let you know when it is available for viewing.</p> + <a name="051122"></a> <h2>May 11, 2022 New GENCODE gene tracks: Human V40 (hg19/hg38) - Mouse M29 (mm39)</h2> <p> We are pleased to announce new GENCODE Gene annotation tracks, which correspond to <a href="https://www.ensembl.info/2022/04/12/ensembl-106-has-been-released/" target="_blank">Ensembl 106</a>, for three assemblies: <a target="_blank" href="../../cgi-bin/hgTrackUi?db=hg19&c=chr21&g=wgEncodeGencodeV40lift37">hg19/GRCh37</a>, <a target="_blank" href="../../cgi-bin/hgTrackUi?db=hg38&c=chr1&g=wgEncodeGencodeV40">hg38/GRCh38</a>, and <a target="_blank" href="../../cgi-bin/hgTrackUi?db=mm39&c=chr12&g=wgEncodeGencodeVM29">mm39/GRCm39</a>. For human, the GENCODE V40 annotations were mapped to hg38/GRCh38 and then back-mapped to the hg19/GRCh37 assembly. For all three assemblies, the gene sets contain the following tracks:</p> <ul> <li>Basic - a subset of the <em>Comprehensive set</em>.</li>