4bf8cd5b339e46ed05d34677f0fed28eb2b03463
lrnassar
  Thu May 26 17:14:43 2022 -0700
Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 0c6aa20..b484095 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -34849,18 +34849,22 @@
 curl https://remap.univ-amu.fr/storage/public/hubReMap2022/hg19/trackDb.txt > human/hg19/reMap.ra
 vi human/hg19/reMap.ra
 vi human/hg19/trackDb.ra
 
 #############################################################################
 # MTR scores refs #29152 (2022-05-9 Lou)
 mkdir /hive/data/outside/mtr
 cd /hive/data/outside/mtr
 wget http://biosig.unimelb.edu.au/mtr-viewer/static/mtrtable_2.0_ens95.txt.gz
 gunzip mtrtable_2.0_ens95.txt.gz
 chromToUcsc --get hg19
 chromToUcsc -i mtrtable_2.0_ens95.txt -i mtrUcsc.txt -a hg19.chromAlias.tsv
 ~/kent/src/hg/makeDb/scripts/mtr/buildMTRbedTrack.py
 ~/kent/src/hg/makeDb/scripts/mtr/buildMTRwigTracks.py
 fetchChromSizes hg19 > chrom.sizes
+wigToBigWig a.wig chrom.sizes a.bw
+wigToBigWig c.wig chrom.sizes c.bw
+wigToBigWig t.wig chrom.sizes t.bw
+wigToBigWig g.wig chrom.sizes g.bw
 bedToBigBed -type=bed9+10 -tab -as=mtr.as mtr2.bed chrom.sizes mtr2.bb
 ln -s /hive/data/outside/mtr2.bb /gbdb/hg19/bbi/
 ln -s /hive/data/outside/*.bw /gbdb/hg19/bbi/