4bf8cd5b339e46ed05d34677f0fed28eb2b03463
lrnassar
  Thu May 26 17:14:43 2022 -0700
Setting MTR track to QA ready. Choosing new .ra setting to highlight low values, updating the make script, and improving the desc page. Refs #29152

diff --git src/hg/makeDb/trackDb/human/mtr.ra src/hg/makeDb/trackDb/human/mtr.ra
index 1a992bd..84705dd 100644
--- src/hg/makeDb/trackDb/human/mtr.ra
+++ src/hg/makeDb/trackDb/human/mtr.ra
@@ -1,75 +1,77 @@
 track mtrBed
 shortLabel MTR All Data 
 longLabel MTR -  Missense Tolerance Ratio Scores all annotations
 parent constraintSuper
 visibility hide
 type bigBed 9 + 10
 itemRgb on
 mouseOver $ref>$alt $MTR ${MTR_centile}
 bigDataUrl /gbdb/$D/bbi/mtr2.bb
 html constraintSuper
-filter.MTR_centile 75:100
+filter.MTR_centile 0.0001:25
 filterByRange.MTR_centile on
 filterLimits.MTR_centile 0:100
 filterLabel.MTR_centile MTR Score percentile
 filter.MTR 0
 filterLabel.MTR MTR Score
 filter.FDR 0
 filterLabel.FDR False discovery rate
 filterValues.consequence missense_variant|Missense variant,synonymous_variant|Synonymous variant,stop_gained|Stop gained,NMD_transcript_variant|NMD transcript variant,splice_region_variant|Splice region variant,start_lost|Start lost,stop_retained_variant|Stop regained variant,incomplete_terminal_codon_variant|Incomplete codon variant,coding_sequence_variant|Coding sequence variant,splice_donor_variant|Splice donor variant,splice_acceptor_variant|Splice acceptor variant
 filterLabel.consequence Consequence
 priority 9.1
 
 track mtrScores
 shortLabel MTR Scores
 longLabel MTR - Missense Tolerance Ratio Scores by base
 type bigWig
 compositeTrack on
 parent constraintSuper
-visibility dense
+visibility full
 maxWindowToQuery 500000
 group phenDis
 color 124,39,175
 maxWindowToDraw 10000000
 mouseOverFunction noAverage
 html constraintSuper
-viewLimits 1:1.56
+viewLimits 0:1.1
 viewLimitsMax 0:1.56
+yLineMark 0.8
+yLineOnOff on
 autoScale group
 priority 9.2
 
         track mtrA
         shortLabel Mutation: A
         longLabel MTR Score: Mutation is A
         type bigWig
         parent mtrScores on
-        visibility dense
+        visibility full
         bigDataUrl /gbdb/$D/mtr/a.bw
         maxHeightPixels 128:30:8
 
         track mtrC
         shortLabel Mutation: C
         longLabel MTR Score: Mutation is C
         type bigWig
         parent mtrScores on
-        visibility dense
+        visibility full
         bigDataUrl /gbdb/$D/mtr/c.bw
         maxHeightPixels 128:30:8
 
         track mtrG
         shortLabel Mutation: G
         longLabel MTR Score: Mutation is G
         type bigWig
         parent mtrScores on
-        visibility dense
+        visibility full
         bigDataUrl /gbdb/$D/mtr/g.bw
         maxHeightPixels 128:30:8
 
         track mtrT
         shortLabel Mutation: T
         longLabel MTR Score: Mutation is T
         type bigWig
         parent mtrScores on
-        visibility dense
+        visibility full
         bigDataUrl /gbdb/$D/mtr/t.bw
         maxHeightPixels 128:30:8