ac8ff435df0013484aee3fbdc6e8bf1840dd6944 brianlee Mon Jun 27 07:35:11 2022 -0700 Adding a news item about logo=on dynseq bigWig feature, no RM diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 52a0ecd..9424efe 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,49 @@ <div class="col-sm-3"> <ul> <li><a href="#2006">2006 News</a></li> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2001">2001</a>-<a href="#2002">2002 News</a></li> </ul> </div> </div> </div> <!-- ============= 2022 archived news ============= --> <a name="2022"></a> +<a name="062722"></a> +<h2>June 27, 2022 New dynseq "logo on" display for bigWigs</h2> +<p> +There is a new <a href="help/bigWig.html#Ex4" target="_blank"><code>logo=on</code></a> +setting for bigWig custom tracks that allows dynamically displaying +sequence at the base level. This <a href="https://kundajelab.github.io/dynseq-pages/" +target="_blank">dynseq</a> display scales nucleotide characters by user-specified, +base-resolution scores. The dynseq feature was developed by the <a target="_blank" +href="https://kundajelab.github.io/about/">Kundaje Lab</a>.</p> +<div class="text-center"> + <a href="help/bigWig.html#Ex4"> + <img src="../../images/dynseq.png" alt="Example4 of dynseq logo=on setting" width="700"> + </a> +</div> +<p> +See <a href="help/bigWig.html#Ex4" target="_blank">an example</a> on the bigWig help page +or read about the <a href="help/trackDb/trackDbHub.html#logo" +target="_blank"><code>logo on</code></a> feature for Track Hubs.</p> + <a name="060322"></a> <h2>June 3, 2022 New clinical data track on hg19/hg38: GenCC</h2> <p> We are happy to add the GenCC clinical track to the human genome assemblies hg19(GRCh37) and hg38(GRCh38). This data set is from the <a target="_blank" href="https://thegencc.org/"> Gene Curation Coalition</a> and contains a list of gene-disease relationships and data. This global coalition harmonizes gene-level resources with disease associations. Visually, the browser tracks are filterable and color classified by evidence validity, from red to green. You can find this track listed under the Phenotype and Literature group. Click on the session below to see GenCC alongside select clinical tracks. </p> <ul> <li><a href="https://genome.ucsc.edu/s/view/GenCC.selectedClinical"> https://genome.ucsc.edu/s/view/GenCC.selectedClinical</a></li> </ul> <p>