File Changes for hiram

v433_preview2 to v433_base (2022-06-20 to 2022-06-27) v433

• src/hg/bedIntersect/bedIntersect.c
  • lines changed 2, context: html, text, full: html, text
    85b15e64af21551227c0c052b3dcbb65a54225ef Fri Jun 24 15:07:55 2022 -0700
    allow binKeeper to work with chr sizes up to 2Gb refs #29545
• src/hg/lib/chromBins.c
  • lines changed 6, context: html, text, full: html, text
    80265657aadfc44b510d03b44d8858cae0dfbda7 Sun Jun 26 16:26:24 2022 -0700
    can use the largest integer for the maximum chrom size for chrom sizes up to 2^31 - 1 no redmine
• src/hg/makeDb/doc/asmHubs/commonNames.pl
  • lines changed 42, context: html, text, full: html, text
    6d83c1f80eed30361f2c3a7d4c1282f48592b839 Wed Jun 22 15:50:38 2022 -0700
    util script to find common name string given an asmId refs #29545
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 107, context: html, text, full: html, text
    9b1060e344334eac530cc21bb44751afd070ee98 Tue Jun 21 12:47:23 2022 -0700
    catch up update as of 23 May 2022 refs #29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    efa46520962635449236b8948ea35205971a5257 Thu Jun 23 09:52:52 2022 -0700
    GenArk update adding four genomes refs #29545
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 23, context: html, text, full: html, text
    8c9a790644615898527e7828e459d72163b1fcbd Wed Jun 22 15:21:20 2022 -0700
    adding 16 new genomes for update refs #29545
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
  • lines changed 29, context: html, text, full: html, text
    189562588fbfacd463e0e121743ca0464d8b1d6f Fri Jun 24 12:30:40 2022 -0700
    GenArk update addgin 29 new genomes refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 82, context: html, text, full: html, text
    cd81f57acca462c86f554b229889fd76664ce5e8 Fri Jun 24 11:06:34 2022 -0700
    GenArk update three failing refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    ef5883930d5d1e990327dc673b23a67c060903fd Thu Jun 23 09:55:08 2022 -0700
    completed GenArk update refs #29545
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
  • lines changed 12, context: html, text, full: html, text
    2365f128025272b7ebff9c96b161e1215a5047c1 Fri Jun 24 11:46:27 2022 -0700
    GenArk update adding 11 genomes refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    69758abc00f4e443b73add19b655d5df9a818567 Tue Jun 21 13:06:01 2022 -0700
    catch up update as of 23 May 2022 refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    96c8a6f205736b81782282a73b25d15463e3ae04 Thu Jun 23 15:05:06 2022 -0700
    GenArk update add three vertebrates refs #29545
• src/hg/utils/automation/HgAutomate.pm
  • lines changed 4, context: html, text, full: html, text
    b67e9a30432634d4134d356a1b7160efaf6facc9 Wed Jun 22 11:37:24 2022 -0700
    nomore newdev no redmine
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 7, context: html, text, full: html, text
    2b2a19a35ceb667d2c0659ff422a980e7e1e22c1 Thu Jun 23 13:23:49 2022 -0700
    correctly sizing numbers in allGaps refs #29545
• src/utils/bedInvert.pl
  • lines changed 3, context: html, text, full: html, text
    8c084018dedc1241e5220ad9b80f83e957368890 Fri Jun 24 15:27:06 2022 -0700
    handle case of empty input file no redmine