All File Changes

v432_base to v433_preview (2022-06-06 to 2022-06-13) v433

• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 18, context: html, text, full: html, text
    15724fd4a6d6bc917c1ed86367a39cdf40404852 Mon Jun 13 08:44:30 2022 -0700
    improving the "my hubs" tab of hgHubConnect, refs #29583
• src/hg/hgTables/bigBed.c
  • lines changed 11, context: html, text, full: html, text
    fbcf701e793eabd40136074b4b7f9d5901a2e6b1 Wed Jun 8 13:20:50 2022 -0700
    make hgTables bigBed output recognize chromAuthority
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 3, context: html, text, full: html, text
    e30de45e8bf6c3f67d07728c32cdbb77833ff76f Mon Jun 6 11:41:47 2022 -0700
    Adding a link to bigNarrowPeak from narrowPeak entry on FAQformats refs #29544
  • lines changed 5, context: html, text, full: html, text
    cb55bf7cf5fe6f9561a8d026075252ee380b008e Sat Jun 11 07:34:50 2022 -0700
    Adding to FAQ/FAQformat.html 2bit entry link to twoBit.html with extraction example of sequence ref #29548
  • lines changed 5, context: html, text, full: html, text
    b0d059aeeda703ccc16652a76cb0940921f4b462 Sun Jun 12 06:35:03 2022 -0700
    Making Code Review changes refs #29553
• src/hg/htdocs/FAQ/FAQlink.html
  • lines changed 40, context: html, text, full: html, text
    e70cfc3b3ff31a9876df98f242162f60f839a7e9 Wed Jun 8 08:05:42 2022 -0700
    Add doc back for hubClear (removed by 39e3bc63) & other hub loading parameters #29562
  • lines changed 17, context: html, text, full: html, text
    59cdd5fa35f3630172e775460b28cdbb8556e6f2 Thu Jun 9 11:20:41 2022 -0700
    Noticed gS_otherUserSessionName vs hgS_otherUserSessionName documentation error (added w/87eae20d) and fixed it and made other improvements on FAQlink, no RM
  • lines changed 9, context: html, text, full: html, text
    5bee5ceb3d7e48e64c5c6b1839b9a0100b5e5e2d Fri Jun 10 06:40:41 2022 -0700
    Adding some anchors to FAQlink.html, no RM
• src/hg/htdocs/goldenPath/help/bigGenePred.html
  • lines changed 5, context: html, text, full: html, text
    b0d059aeeda703ccc16652a76cb0940921f4b462 Sun Jun 12 06:35:03 2022 -0700
    Making Code Review changes refs #29553
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
  • lines changed 1, context: html, text, full: html, text
    b0d059aeeda703ccc16652a76cb0940921f4b462 Sun Jun 12 06:35:03 2022 -0700
    Making Code Review changes refs #29553
• src/hg/htdocs/goldenPath/help/sessions.html
  • lines changed 21, context: html, text, full: html, text
    cfd961e29652fe4d249f219126d8c41ba8d83d1c Mon Jun 13 06:28:35 2022 -0700
    Added a section in Session Gallery about Public Sessions and how labs can make their own Lab Session Gallery refs #19784
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html
  • lines changed 1, context: html, text, full: html, text
    b0d059aeeda703ccc16652a76cb0940921f4b462 Sun Jun 12 06:35:03 2022 -0700
    Making Code Review changes refs #29553
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 3, context: html, text, full: html, text
    205a886368131794545dc29592ba46064ba7e5ba Tue Jun 7 07:47:33 2022 -0700
    Enticing Track Hub developers to doc hubs as way for users to cite their work.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 0, context: html, text, full: html, text
    b0d059aeeda703ccc16652a76cb0940921f4b462 Sun Jun 12 06:35:03 2022 -0700
    Making Code Review changes refs #29553
• src/hg/js/hgHubConnect.js
  • lines changed 22, context: html, text, full: html, text
    15724fd4a6d6bc917c1ed86367a39cdf40404852 Mon Jun 13 08:44:30 2022 -0700
    improving the "my hubs" tab of hgHubConnect, refs #29583
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 3, context: html, text, full: html, text
    d3f10d061baa9678c8314a03e7bd29f289ccdea9 Sat Jun 11 01:56:00 2022 -0700
    adding GCA_009806435.2_UM_NZW_1.0 per user request refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    c180986580a1ade8c1c32cff685d3c0b0472339e Sat Jun 11 01:58:19 2022 -0700
    adding GCA_009806435.2_UM_NZW_1.0 per user request refs #29545
• src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    ccaa9ba3f47735d27555428748b535a7fe1fa5ef Sat Jun 11 01:59:29 2022 -0700
    adding GCF_014621545.1_ASM1462154v1 Monkeypox virus refs #29484
• src/hg/makeDb/trackDb/human/constraintSuper.html
  • lines changed 44, context: html, text, full: html, text
    6630c8a0c3f887a5f9cea9fdc5dfb3205615b958 Mon Jun 6 14:33:12 2022 -0700
    Adding a yline at the 90th percentile and expanding the documentation on interpretation of JARVIS. Refs #29154
  • lines changed 18, context: html, text, full: html, text
    b9328bcc8d11dacf366183711dd8a481da74664b Tue Jun 7 01:42:07 2022 -0700
    tiny changes to constraint super track docs page after email exchange with Lou, refs #29043
  • lines changed 37, context: html, text, full: html, text
    1e9aa1fd4296d98295a43350379e96e37dc7cbe4 Tue Jun 7 01:54:49 2022 -0700
    Lou was quicker than I. :-) Merge branch 'master' of hgwdev.gi.ucsc.edu:/data/git/kent Conflicts: src/hg/makeDb/trackDb/human/constraintSuper.html
• src/hg/makeDb/trackDb/human/genCC.html
  • lines changed 2, context: html, text, full: html, text
    d1ac31137e6099d6b89801260ff0d055f81e67b0 Mon Jun 6 12:55:08 2022 -0700
    Clarifying a sentence, no RM.
• src/hg/makeDb/trackDb/human/jarvis.ra
  • lines changed 3, context: html, text, full: html, text
    6630c8a0c3f887a5f9cea9fdc5dfb3205615b958 Mon Jun 6 14:33:12 2022 -0700
    Adding a yline at the 90th percentile and expanding the documentation on interpretation of JARVIS. Refs #29154
• src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.ra
  • lines changed 6, context: html, text, full: html, text
    92967c35632bfc4c2b13276b2e459757fab1d7f5 Mon Jun 6 17:37:05 2022 -0700
    new mm39 VM30 GENCODE release
• src/hg/makeDb/trackDb/mouse/mm39/knownGeneArchive.ra
  • lines changed 25, context: html, text, full: html, text
    d3241002ca8544c53e2f4821b3a442af0a67bd81 Wed Jun 8 09:29:26 2022 -0700
    add VM30 to archive
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 5, context: html, text, full: html, text
    b82dc4064ed8467e65e54bf87ca1888b075d579a Wed Jun 8 01:38:47 2022 -0700
    small fix to clinvar otto job, no redmine
• src/isPcr/gfPcr/gfPcr.c
  • lines changed 1, context: html, text, full: html, text
    dff08fa790cf447dfc913940ce110ca45143e1b2 Thu Jun 9 00:16:44 2022 -0700
    core dump freeing memory
• src/lib/linefile.c
  • lines changed 8, context: html, text, full: html, text
    47e2de639124cff904c911e6e12baf596d32e91f Tue Jun 7 16:41:51 2022 -0700
    Braney code review suggestion: don't enforce an arbitrary line size limit, just keep going until & unless we run out of memory. refs #29551
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    7730ee5fab0879edeac2e1218c23596dbf41e263 Mon Jun 13 10:05:48 2022 -0700
    v433 preview1, refs #29585

• lines changed: 317
• files changed: 29