a48630858b24b1a4dacf2077c92a44202b31b0b1 hiram Thu Jul 14 19:21:55 2022 -0700 catch up VGP with new and updated assemblies already in GenArk refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index cd18768..8f47be0 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -77,51 +77,60 @@ 9337 GCA_011100635.1_mTriVul1.pri mammals 9337 GCA_011100645.1_mTriVul1.alt mammals 61156 GCA_011750645.1_mArvNil1.mat mammals 61156 GCA_011762505.1_mArvNil1.pat.X mammals 9739 GCA_011762515.1_mTurTru1.pat mammals 9739 GCA_011762535.1_mTurTru1.mat mammals 61156 GCA_011762545.1_mArvNil1.pat mammals 9739 GCA_011762595.1_mTurTru1.mat.Y mammals 13146 GCA_012275265.1_bMelUnd1.mat birds 13146 GCA_012275275.1_bMelUnd1.pat birds 13146 GCA_012275295.1_bMelUnd1.mat.Z birds 48427 GCA_013368605.1_bNycGra1.pri birds 73324 GCA_014839755.1_bSylBor1.pri birds 118200 GCA_014839835.1_bDryPub1.pri birds 488313 GCA_015220805.1_bPogPus1.pri birds +10116 GCA_015244455.1_mRatBN7.1_alternate_haplotype mammals +8790 GCA_016128335.1_ZJU1.0 birds 57068 GCA_016904835.1_bAcaChl1.pri birds 670352 GCA_017639485.1_bPluApr1.pri birds 52777 GCA_017639555.1_bCicMag1.pri birds 55661 GCA_017976375.1_bCucCan1.pri birds +8895 GCA_020740795.1_bApuApu2.pri.cur birds +243314 GCA_020745705.1_bHemCom1.pri.cur birds +1118847 GCA_020745775.1_bTheCae1.pri.cur birds +297711 GCA_020746105.1_bTroSur1.pri.cur birds +439704 GCA_020800305.1_bPorHoc1.mat.Z.cur birds +439704 GCA_020801775.1_bPorHoc1.pat.decon birds 64144 GCA_900324465.2_fAnaTes1.2 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 441366 GCA_900634775.1_fGouWil2.1 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish 205130 GCA_900700395.1_fMasArm1.2_alternate_haplotype fish 27687 GCA_900700845.2_fErpCal1.1_alternate_haplotype fish 8175 GCA_900880695.1_fSpaAur1.1_alternate_haplotype fish 173247 GCA_900963505.1_fEcheNa1.1_alternate_haplotype fish 113540 GCA_900964985.2_fSclFor1.1_alternate_haplotype fish 31033 GCA_901000745.3_fTakRub1.2_alternate_haplotype fish 194408 GCA_901001175.1_aRhiBiv1.1_alternate_haplotype amphibians 177155 GCA_901699155.1_bStrTur1.1 birds +177155 GCA_901699155.2_bStrTur1.2 birds 177155 GCA_901699165.1_bStrTur1.1_alternate_haplotype birds 161584 GCA_901709675.1_fSynAcu1.1 fish 161584 GCA_901709685.1_fSynAcu1.1_alternate_haplotype fish 1415580 GCA_901765105.1_aMicUni1.1_alternate_haplotype amphibians 586833 GCA_902148815.1_fMyrMur1.1_alternate_haplotype fish 375764 GCA_902148825.1_fSphaOr1.1_alternate_haplotype fish 181472 GCA_902148835.1_fSalaFa1.1_alternate_haplotype fish 223781 GCA_902153765.1_bAquChr1.2_alternate_haplotype birds 8049 GCA_902167395.1_gadMor3.0_alternate_haplotype fish 29144 GCA_902362175.1_fChaCha1.1_alternate_haplotype fish 7604 GCA_902459445.1_eAstRub1.2_alternate_haplotype echinoderm 260995 GCA_902459495.1_aGeoSer1.1_alternate_haplotype amphibians 260995 GCA_902459505.1_aGeoSer1.1 amphibians 390379 GCA_902500245.1_fThaAma1.1_alternate_haplotype fish 390379 GCA_902500255.1_fThaAma1.1 fish @@ -138,98 +147,113 @@ 2489341 GCF_004027225.2_bStrHab1.2.pri birds 9258 GCF_004115215.2_mOrnAna1.pri.v4 mammals 59479 GCF_004115265.1_mRhiFer1_v1.p mammals 89673 GCF_004126475.1_mPhyDis1_v1.p mammals 89673 GCF_004126475.2_mPhyDis1.pri.v3 mammals 63155 GCF_007364275.1_fArcCen1 fish 1825980 GCF_007399415.2_rGopEvg1_v1.p reptiles 61383 GCF_007474595.1_mLynCan4_v1.p mammals 61383 GCF_007474595.2_mLynCan4.pri.v2 mammals 42100 GCF_008692025.1_mPhoSin1.pri mammals 59729 GCF_008822105.2_bTaeGut2.pat.W.v2 birds 1196302 GCF_009650955.1_bCorMon1.pri birds 9704 GCF_009762305.2_mZalCal1.pri.v2 mammals 1203425 GCF_009762535.1_fNotCel1.pri fish 27794 GCF_009764565.2_rDerCor1.pri.v3 reptiles +27794 GCF_009764565.3_rDerCor1.pri.v4 reptiles 35005 GCF_009769535.1_rThaEle1.pri reptiles 8103 GCF_009769545.1_fCycLum1.pri fish 8869 GCF_009769625.2_bCygOlo1.pri.v2 birds 80427 GCF_009819535.1_rLacAgi1.pri reptiles 8267 GCF_009819705.1_fHipHip1.pri fish 219594 GCF_009819795.1_bAytFul2.pri birds 91951 GCF_009819885.1_bCatUst1.pri birds +91951 GCF_009819885.2_bCatUst1.pri.v2 birds 409849 GCF_009829125.1_fPerMag1.pri fish 296741 GCF_009829145.1_bChiLan1.pri birds 36723 GCF_009829155.1_mMusErm1.Pri mammals 9771 GCF_009873245.2_mBalMus1.pri.v3 mammals 386614 GCF_010909765.1_sAmbRad1.pri sharks 386614 GCF_010909765.2_sAmbRad1.1.pri sharks 7757 GCF_010993605.1_kPetMar1.pri otherChordates 8010 GCF_011004845.1_fEsoLuc1.pri fish 9337 GCF_011100635.1_mTriVul1.pri mammals 61156 GCF_011762505.1_mArvNil1.pat.X mammals 9739 GCF_011762595.1_mTurTru1.mat.Y mammals 13146 GCF_012275295.1_bMelUnd1.mat.Z birds 7936 GCF_013347855.1_fAngAng1.pri fish 8005 GCF_013358815.1_fEleEle1.pri fish 118141 GCF_013368585.1_fMegCyp1.pri fish 51298 GCF_014108235.1_mMyoMyo1.p mammals 59472 GCF_014108245.1_mPipKuh1.p mammals 27622 GCF_014108415.1_mMolMol1.p mammals 9407 GCF_014176215.1_mRouAeg1.p mammals 120794 GCF_015220075.1_bFalRus1.pri birds 27675 GCF_015220235.1_mChoDid1.pri mammals 42514 GCF_015220715.1_fPygNat1.pri fish 72105 GCF_015220745.1_fSebUmb1.pri fish 10116 GCF_015227675.2_mRatBN7.2 mammals 43150 GCF_015227805.1_bHirRus1.pri.v2 birds 8469 GCF_015237465.1_rCheMyd1.pri reptiles 8469 GCF_015237465.2_rCheMyd1.pri.v2 green sea turtle (v2 2021) 8839 GCF_015476345.1_ZJU1.0 birds +8839 GCF_015476345.1_ZJU1.0 birds 9261 GCF_015852505.1_mTacAcu1.pri mammals 9031 GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b birds 9031 GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w birds +9031 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GCF_900634795.3_fBetSpl5.3 fish 299321 GCF_900700375.1_fDenClu1.1 fish 27687 GCF_900747795.1_fErpCal1.1 fish 8175 GCF_900880675.1_fSpaAur1.1 fish 173247 GCF_900963305.1_fEcheNa1.1 fish 113540 GCF_900964775.1_fSclFor1.1 fish 31033 GCF_901000725.2_fTakRub1.2 fish 194408 GCF_901001135.1_aRhiBiv1.1 amphibians 8032 GCF_901001165.1_fSalTru1.1 fish 161584 GCF_901709675.1_fSynAcu1.2 fish 1415580 GCF_901765095.1_aMicUni1.1 amphibians 181472 GCF_902148845.1_fSalaFa1.1 fish 375764 GCF_902148855.1_fSphaOr1.1 fish 586833 GCF_902150065.1_fMyrMur1.1 fish 8049 GCF_902167405.1_gadMor3.0 fish 29144 GCF_902362185.1_fChaCha1.1 fish 7604 GCF_902459465.1_eAstRub1.3 echinoderm 260995 GCF_902459505.1_aGeoSer1.1 amphibians 390379 GCF_902500255.1_fThaAma1.1 fish 6579 GCF_902652985.1_xPecMax1.1 molluscs +9657 GCF_902655055.1_mLutLut1.2 mammals +30640 GCF_902686445.1_mSciCar1.2 mammals 7906 GCF_902713435.1_fAciRut3.1_paternal_haplotype fish 1047088 GCF_903992535.1_mArvAmp1.1 mammals 1047088 GCF_903992535.2_mArvAmp1.2 mammals 38674 GCF_903995425.1_mOncTor1.1 mammals 8177 GCF_904848185.1_fAcaLat1.1 fish 91739 GCF_905147365.1_ilAriAges1.1 insects 116150 GCF_905163445.1_ilParAegt1.1 insects 8384 GCF_905171765.1_aBufBuf1.1 amphibians 8407 GCF_905171775.1_aRanTem1.1 amphibians +9860 GCF_910594005.1_mCerEla1.1 mammals +8240 GCF_910596095.1_fThuMac1.1 fish +8236 GCF_914725855.1_fThuAlb1.1 fish