c200ff2fb784fbbb87ef547abde79d805217d3b5
markd
  Fri Jul 15 20:32:22 2022 -0700
re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks

diff --git src/hg/makeDb/doc/hs1/initial.txt src/hg/makeDb/doc/hs1/initial.txt
index f03007e..ea5e118 100644
--- src/hg/makeDb/doc/hs1/initial.txt
+++ src/hg/makeDb/doc/hs1/initial.txt
@@ -30,15 +30,28 @@
 cd  ~/kent/src/hg/makeDb/trackDb
 make DBS=hs1
 # had to fix following errors
 # Duplicate tag shortLabel in record starting line 817 of /cluster/home/braney/kent/src/hg/makeDb/trackDb/human/hs1/trackDb.ra
 
 
 # hgTrackDb doesn't find html if the trackDb has already appended the .html
 # hgTrackDb barfs on dollar signs because it assumes it's a variable (windowmasker, hgLiftOver)
 # Track hs1.T2T_Encode has non-conforming 'cell' tag '22Rv1' (begins with digit)
 # multiple shortLabel lines
 
 # need to add dbDb line
 insert into dbDb values('hs1','hs1 - t2t chm13','hub:/gbdb/hs1/hubs','Human','chrX:15,177,876-15,185,140',1,2003, 'Human','','',0,0,'',1);
 
 # fix paths to chromAlias.bb and twoBitPath and groups
+
+# 2022-07-15 markd:
+# convert bbi and ixIxx to real directories:
+
+  mkdir bbi.new/
+  for f in bbi/* ; do ln -s $(realpath $f) bbi.new/$(basename $f) ;done
+  rm bbi
+  mv bbi.new bbi
+
+  mkdir ixIxx.new
+  for f in ixIxx/* ; do ln -s $(realpath $f) ixIxx.new/$(basename $f) ;done
+  rm ixIxx
+  mv ixIxx.new ixIxx