c67f70fced286da481cf4a3c73013d1d2fca909b max Fri Jul 1 07:07:13 2022 -0700 adding lrg ncbi accession to search specs, refs #29689 diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index ded35a9..ca83532 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -104,31 +104,31 @@ shortLabel LRG Regions longLabel Locus Reference Genomic (LRG) Sequences Mapped to $date Assembly group map visibility hide type bigBed 12 + noScoreFilter . urlLabel Link to LRG report: url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml urls hgncId="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" ncbiAcc="https://www.ncbi.nlm.nih.gov/nuccore/$$" baseColorDefault diffBases baseColorUseSequence lrg indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . color 72,167,38 -searchIndex name +searchIndex name,ncbiAcc track gad shortLabel GAD View longLabel Genetic Association Studies of Complex Diseases and Disorders group phenDis visibility hide color 200,0,0 type bed 4 url http://geneticassociationdb.nih.gov/cgi-bin/tableview.cgi?table=allview&cond=gene= track decipher shortLabel DECIPHER CNVs longLabel DECIPHER CNVs group phenDis visibility hide @@ -4134,31 +4134,32 @@ searchTable uniGene_3 searchType psl termRegex Hs\.[0-9]+ searchPriority 20 searchTable HInvGeneMrna searchMethod exact searchType psl termRegex HIT[0-9]{9,9} searchPriority 50 searchTable lrg searchMethod exact searchType bigBed -termRegex LRG_[0-9]+ +termRegex (LRG_[0-9]+)|(NG_[0-9]+\.[0-9]+) +#termRegex NG_[0-9]+\.[0-9]+ semiShortCircuit 1 searchPriority 49 release alpha searchTable lrgBigPsl searchMethod exact searchType bigBed termRegex LRG_[0-9]+t[0-9]+ semiShortCircuit 1 searchPriority 50 release alpha searchTable lrgTranscriptAli searchMethod exact searchType psl