Commits for hiram

326745a4a6e13e07a168cae439e93e7faa2401d2 Tue Jul 5 16:10:38 2022 -0700

adding 27 for an update refs #29545
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 27, context: html, text, full: html, text

adf76850d9c32b6dcfe0c78b4a218c9c96c08331 Wed Jul 6 10:50:52 2022 -0700

adding two updates refs #29545
- src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 3, context: html, text, full: html, text

2d2c836edaff720e31ac3fab4433e15f744b7245 Wed Jul 6 12:46:13 2022 -0700

improve the description vs. the organism strings in the hub.txt refs #29545
- src/hg/makeDb/doc/asmHubs/mkGenomes.pl - lines changed 33, context: html, text, full: html, text

1290eaf14faaf78d5ba17002f6e218a861f995a4 Wed Jul 6 14:06:28 2022 -0700

the description is used in the pull down menu on gateway page should be common name then use organism for extra assembly info refs #29545
- src/hg/makeDb/doc/asmHubs/mkGenomes.pl - lines changed 6, context: html, text, full: html, text

3b6ebe76f680c5b2c7bf7eaa99e99b7ee63f41b3 Wed Jul 6 15:43:20 2022 -0700

adding three for update refs #29545
- src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 3, context: html, text, full: html, text

491eccff49c233439e347c3dfa12f220bc09ad4f Wed Jul 6 16:17:52 2022 -0700

recent updates have moved many assemblies to legacy status refs #29545
- src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 47, context: html, text, full: html, text

d9ed87e2aaef228e0db6ee588aac864ce1023cd1 Thu Jul 7 11:19:01 2022 -0700

adding one for GenArk update refs #29545
- src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 1, context: html, text, full: html, text

d49adb89518278594c8e7539134002658d8115df Thu Jul 7 11:49:40 2022 -0700

update for brew version on mac OSX changes name of mariadb file locations no redmine
- src/inc/common.mk - lines changed 8, context: html, text, full: html, text

e6ab9f0288b5e46ed6f476b1f274015ad6e30c7e Thu Jul 7 14:10:27 2022 -0700

adding three for an update refs #29545
- src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 4, context: html, text, full: html, text

0b9f31851f3e27dd8440bedb84d0a65280439e51 Thu Jul 7 15:11:36 2022 -0700

adding five for GenArk update refs #29545
- src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 11, context: html, text, full: html, text

3724599e33363bbf5e1807d5180ef0d5bafcfd6e Fri Jul 8 10:30:04 2022 -0700

adding 7 for a GenArk update refs #29545
- src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 17, context: html, text, full: html, text

a903f12655c0a249e565738da40da8380883f831 Fri Jul 8 12:06:22 2022 -0700

GenArk updates moved assemblies to legacy refs #29545
- src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 6, context: html, text, full: html, text

96e0638386a941c3890e3ef66db4fb2860c38b28 Fri Jul 8 14:48:56 2022 -0700

catching up this GenArk list with the VGP assemblies refs #29545
- src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 3, context: html, text, full: html, text

7d575ebda40d60d503e170bcbd65c41ce9761cf0 Fri Jul 8 16:31:05 2022 -0700

catch up GenArk with VGP assemblies refs #29545
- src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 33, context: html, text, full: html, text