ae53d1dc78b4079bb3427597efe465aa7bfe6ddc kent Mon Jul 4 17:34:00 2022 -0700 Changing debugging output. diff --git src/hg/hgTracks/cds.h src/hg/hgTracks/cds.h index 99f2a96..35159fb 100644 --- src/hg/hgTracks/cds.h +++ src/hg/hgTracks/cds.h @@ -86,30 +86,32 @@ #define CDS_SYN_BLEND_B 0 // Ribosomal shift colors #define CDS_RIBO_SLIP1 13 /* purple */ #define CDS_RIBO_SLIP1_R 250 #define CDS_RIBO_SLIP1_G 50 #define CDS_RIBO_SLIP1_B 255 #define CDS_RIBO_SLIP2 14 /* cyan */ #define CDS_RIBO_SLIP2_R 50 #define CDS_RIBO_SLIP2_G 250 #define CDS_RIBO_SLIP2_B 255 #define CDS_NUM_COLORS 15 +extern struct cacheTwoBitRanges *cdsQueryCache; /* Cache of querie sequences in alignments */ + Color getCdsColor(int index); /* return color from index of types of colors */ enum baseColorDrawOpt baseColorGetDrawOpt(struct track *tg); /* Determine what base/codon coloring option (if any) has been selected * in trackDb/cart, and gate with zoom level. */ struct simpleFeature *baseColorCodonsFromGenePred(struct linkedFeatures *lf, struct genePred *gp, boolean colorStopStart, boolean codonNumbering); /* Given an lf and the genePred from which the lf was constructed, * return a list of simpleFeature elements, one per codon (or partial * codon if the codon falls on a gap boundary. */ struct simpleFeature *baseColorCodonsFromPsl(struct linkedFeatures *lf,