be16de4acd8ff396b9b2a58f5632275ccf3131e5 lrnassar Wed Jul 6 12:12:52 2022 -0700 Adding a link to the raw data at author's request, refs #23883 diff --git src/hg/makeDb/trackDb/human/constraintSuper.html src/hg/makeDb/trackDb/human/constraintSuper.html index 59cb427..1037577 100644 --- src/hg/makeDb/trackDb/human/constraintSuper.html +++ src/hg/makeDb/trackDb/human/constraintSuper.html @@ -190,30 +190,33 @@ <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg19.txt" target=_blank>makeDoc</a> hg19 build log.</p> <h3>MetaDome</h3> <p> The authors provided a bed file containing codon coordinates along with the scores. This file was parse with a python script to create the two tracks. For the first track the scores were aggregated for each coordinate, then the lowest score chosen for any overlaps and the result written out to bedGraph format. The file was then converted to bigWig with the <code>bedGraphToBigWig</code> utility. For the second track the file was reorganized into a bed 4+3 and conveted to bigBed with the <code>bedToBigBed</code> utility.</p> <p> See the <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg19.txt" target=_blank>hg19 makeDoc</a> for details including the build script.</p> +<p> +The raw MetaDome data can also be accessed via their <a target="_blank" +href="https://zenodo.org/record/6625251">Zenodo handle</a>.</p> <h3>MTR</h3> <p> <a href="http://biosig.unimelb.edu.au/mtr-viewer/downloads" target="_blank">V2 file</a> was downloaded and columns were reshuffled as well as itemRgb added for the <b>MTR All data</b> track. For the <b>MTR Scores</b> track the file was parsed with a python script to pull out the highest possible MTR score for each of the 3 possible mutations at each base pair and 4 tracks built out of these values representing each mutation.</p> <p> See the <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg /makeDb/doc/hg19.txt" target=_blank>hg19 makeDoc</a> entry on MTR for more info.</p> <h2>Data Access</h2> <p> The raw data can be explored interactively with the <a href="../hgTables">Table Browser</a>, or