db872ad0e2ac111a8c955ad1a5658ee53d3eb2ab gperez2 Fri Aug 5 11:25:08 2022 -0700 Replacing links with the resources a user shared and removing library name links, refs #29824 diff --git src/hg/makeDb/trackDb/mouse/cloneEndSuper.html src/hg/makeDb/trackDb/mouse/cloneEndSuper.html index 3493c7b..4970aeb 100644 --- src/hg/makeDb/trackDb/mouse/cloneEndSuper.html +++ src/hg/makeDb/trackDb/mouse/cloneEndSuper.html @@ -35,51 +35,48 @@

Methods

The mappings of these BAC end sequences are taken directly from the NCBI Clone DB FTP site ftp.ncbi.nih.gov/repository/clone/reports/Mus_musculus/ *.GCF_000001635.22.103.*.gff files.

UCSC filtered the NCBI Clone DB mapped ends to drop ends that mapped to a region that was three times longer than the median size of the clones in the library. Only libraries with more than 20,000 clones are included in this track display.

-Click through on displayed items to the Clone DB database information, -including -Clone DB distributor references. +Click through on displayed items to the Clone DB distributor references.

- - - - - - - - - - - + + + + + + + + + + +

library name	total clones	total end sequences	NCBI mapped ends	UCSC filtered ends	UCSC dropped	percent dropped
B6Ng01	128,007	253,638	98,478	95,837	2,641	2.68
bMQ	129,826	244,222	75,671	72,540	3,131	4.14
C3H	86,696	169,665	43,690	42,378	1,312	3.00
CH29	93,023	340,272	52,320	50,621	1,699	3.25
DN	180,218	665,070	106,463	100,472	5,991	5.63
MHPN	118,658	208,707	61,942	58,582	3,360	5.42
MHPP	67,769	112,081	30,594	28,550	2,044	6.68
MSMg01	175,178	337,471	83,677	78,772	4,905	5.86
RP23	175,999	553,274	85,082	83,062	2,020	2.37
RP24	163,859	294,217	52,470	50,849	1,621	3.09
WI1	907,213	1,822,723	337,591	324,259	13,332	3.95
B6Ng01	128,007	253,638	98,478	95,837	2,641	2.68
bMQ	129,826	244,222	75,671	72,540	3,131	4.14
C3H	86,696	169,665	43,690	42,378	1,312	3.00
CH29	93,023	340,272	52,320	50,621	1,699	3.25
DN	180,218	665,070	106,463	100,472	5,991	5.63
MHPN	118,658	208,707	61,942	58,582	3,360	5.42
MHPP	67,769	112,081	30,594	28,550	2,044	6.68
MSMg01	175,178	337,471	83,677	78,772	4,905	5.86
RP23	175,999	553,274	85,082	83,062	2,020	2.37
RP24	163,859	294,217	52,470	50,849	1,621	3.09
WI1	907,213	1,822,723	337,591	324,259	13,332	3.95

Credits

Additional information about the clone, including how it can be obtained, may be found at the NCBI Clone Registry. To view the registry entry for a specific clone, open the details page for the clone and click on its name at the top of the page.