8f226d9ae51d5aa0907e717fb310cab91a54cf87 hiram Wed Jul 20 17:21:05 2022 -0700 better choice of common names and manage lower valid track count for viruses refs #29484 diff --git src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh index defb6e6..50eab40 100755 --- src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh +++ src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh @@ -6,32 +6,39 @@ printf "usage: ./verifyOnDownload.sh \n" 1>&2 printf "where is something like:\n" 1>&2 printf "api-test.gi.ucsc.edu - to use the hgwdev server\n" 1>&2 printf "apibeta.soe.ucsc.edu - to use the hgwbeta server\n" 1>&2 exit 255 fi # printf "usage: ./verifyOnDownload.sh \n" 1>&2 # ${toolsDir}/mkSendList.pl ${orderList} | while read F; do \ # ${toolsDir}/verifyOnDownload.sh $$F < /dev/null; done export host=$1 export orderList=$2 export successCount=0 export doneCount=0 +export fileName=`basename $orderList` +export subset=${fileName%.orderList.tsv} export minTrackCount=12 +if [ "${subset}" == "viral" ]; then + minTrackCount=7 +fi + +# printf "# DBG subset '%s' min: %d\n" "${subset}" "${minTrackCount}" 1>&2 export dbHost="localhost" export hubSource="hgdownload-test.gi.ucsc.edu" if [ "${host}" = "apibeta.soe.ucsc.edu" ]; then hubSource="hgdownload.soe.ucsc.edu" fi export totalTrackCount=0 for dirPath in `~/kent/src/hg/makeDb/doc/asmHubs/mkSendList.pl "${orderList}"` do ((doneCount=doneCount+1)) export genome=`basename $dirPath`