75fb410e4222543ccdc30335f02247649e0d7186 hiram Wed Jul 20 12:51:15 2022 -0700 output nothing when nothing to output no redmine diff --git src/utils/bedSingleCover.pl src/utils/bedSingleCover.pl index 51da908..3e64b4d 100755 --- src/utils/bedSingleCover.pl +++ src/utils/bedSingleCover.pl @@ -43,17 +43,19 @@ printf "%s\t%d\t%d\t%d\n", $chr, $start, $end, $size; $chr = $c; $start = $s; $end = $e; } else { if ($s <= $end) { $end = $e if ($e > $end); } else { printf "%s\t%d\t%d\t%d\n", $chr, $start, $end, $size; $chr = $c; $start = $s; $end = $e; } } } else { $chr = $c; $start = $s; $end = $e; } } $size = $end - $start; +if ($size > 0) { printf "%s\t%d\t%d\t%d\n", $chr, $start, $end, $size; +} close (FH);