63016a5603d71b06864a89f83b97921feef7f1e6 lrnassar Mon Jul 18 15:08:49 2022 -0700 Removing whole genome queries for JASPAR and expanding the data access section, refs #29697 diff --git src/hg/makeDb/trackDb/human/jaspar.ra src/hg/makeDb/trackDb/human/jaspar.ra index d1658c9..2ff0cff 100644 --- src/hg/makeDb/trackDb/human/jaspar.ra +++ src/hg/makeDb/trackDb/human/jaspar.ra @@ -1,55 +1,57 @@ # Native Track integration from Public Hub # Dan Schmelter August 2021 track jaspar compositeTrack on shortLabel JASPAR Transcription Factors longLabel JASPAR Transcription Factor Binding Site Database group regulation visibility hide type bigBed 6 . url http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all urlLabel View on JASPAR: filter.score 400 filterByRange.score 0:1000 maxItems 100000 maxWindowCoverage 50000 exonArrows on spectrum on noParentConfig on showCfg on +tableBrowser tbNoGenome +noGenomeReason JASPAR files contain billions of items. The Table Browser allows regional queries for this track, but those may timeout as well if the regions are too big. See the Data Access section in the track description page for other ways to query this data, such as command line tools and our API. track jaspar2022 parent jaspar on shortLabel JASPAR 2022 TFBS longLabel JASPAR CORE 2022 - Predicted Transcription Factor Binding Sites priority 1 type bigBed 6 + visibility pack bigDataUrl /gbdb/$D/jaspar/JASPAR2022.bb motifPwmTable hgFixed.jasparCore2022 labelFields TFName filterValues.TFName Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,ATF2,Atf3,ATF3,ATF4,ATF6,ATF7,Atoh1,ATOH7,BACH1,Bach1::Mafk,BACH2,BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,Bcl11B,BCL6,BCL6B,Bhlha15,BHLHA15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BNC2,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,Creb5,CREM,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,DLX1,Dlx2,Dlx3,Dlx4,Dlx5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA1,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,Elf5,ELK1,ELK1::HOXA1,ELK1::HOXB13,ELK1::SREBF2,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERF::FIGLA,ERF::FOXI1,ERF::FOXO1,ERF::HOXB13,ERF::NHLH1,ERF::SREBF2,Erg,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV2::DRGX,ETV2::FIGLA,ETV2::FOXI1,ETV2::HOXB13,ETV3,ETV4,ETV5,ETV5::DRGX,ETV5::FIGLA,ETV5::FOXI1,ETV5::FOXO1,ETV5::HOXA2,ETV6,ETV7,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FIGLA,FLI1,FLI1::DRGX,FLI1::FOXI1,FOS,FOSB::JUN,FOSB::JUNB,FOS::JUN,FOS::JUNB,FOS::JUND,FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUND,FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,FOXD3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,FOXJ2::ELF1,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,Foxn1,FOXN3,Foxo1,FOXO1::ELF1,FOXO1::ELK1,FOXO1::ELK3,FOXO1::FLI1,Foxo3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,GABPA,GATA1,GATA1::TAL1,GATA2,Gata3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1B,Gli1,Gli2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HMBOX1,Hmx1,Hmx2,Hmx3,Hnf1A,HNF1A,HNF1B,HNF4A,HNF4G,HOXA1,HOXA10,Hoxa11,Hoxa13,HOXA2,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB13,HOXB2,HOXB2::ELK1,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD12::ELK1,Hoxd13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,Ikzf3,INSM1,Irf1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,Jun,JUN,JUNB,JUND,JUN::JUNB,KLF1,KLF10,KLF11,KLF12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF7,KLF9,LBX1,LBX2,Lef1,Lhx1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,Mafg,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MGA::EVX1,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,Msgn1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,NEUROD1,Neurod2,NEUROG1,NEUROG2,Nfat5,Nfatc1,Nfatc2,NFATC3,NFATC4,NFE2,Nfe2l2,NFIA,NFIB,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,Nkx2-1,NKX2-2,NKX2-3,NKX2-4,NKX2-5,NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,Npas4,NR1D1,NR1D2,Nr1H2,NR1H2::RXRA,Nr1h3::Rxra,Nr1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2F6,NR2F6,NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5A2,NR6A1,Nrf1,NRL,OLIG1,Olig2,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PATZ1,PAX1,PAX2,PAX3,PAX4,PAX5,PAX6,Pax7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F1::SOX2,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm14,Prdm15,Prdm4,Prdm5,PRDM9,PROP1,PROX1,PRRX1,PRRX2,Ptf1a,Ptf1A,RARA,RARA::RXRA,RARA::RXRG,Rarb,RARB,Rarg,RARG,RAX,RAX2,RBPJ,Rbpjl,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,Rfx6,RFX7,Rhox11,RHOXF1,RORA,RORB,RORC,RREB1,Runx1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SATB1,SCRT1,SCRT2,Sf1,SHOX,Shox2,SIX1,SIX2,Six3,Six4,SMAD2,Smad2::Smad3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP5,SP8,SP9,SPDEF,Spi1,SPIB,SPIC,Spz1,SREBF1,SREBF2,SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,Tbx6,TBXT,Tcf12,TCF12,Tcf21,TCF21,TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2B,TFAP2C,TFAP2E,TFAP4,TFAP4::ETV1,TFAP4::FLI1,TFCP2,Tfcp2l1,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,Thap11,THRA,THRB,TLX2,TP53,TP63,TP73,TRPS1,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,Vdr,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,Yy1,YY2,ZBED1,ZBED2,ZBTB12,ZBTB14,ZBTB18,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP14,Zfp335,ZFP42,ZFP57,Zfx,ZIC1,Zic1::Zic2,Zic2,Zic3,ZIC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF16,ZNF189,ZNF211,ZNF214,ZNF24,ZNF257,ZNF263,ZNF274,ZNF281,ZNF282,ZNF317,ZNF320,ZNF324,ZNF331,ZNF341,ZNF343,ZNF354A,ZNF354C,ZNF382,ZNF384,ZNF410,ZNF416,ZNF417,ZNF418,Znf423,ZNF449,ZNF454,ZNF460,ZNF528,ZNF530,ZNF549,ZNF574,ZNF582,ZNF610,ZNF652,ZNF667,ZNF669,ZNF675,ZNF680,ZNF682,ZNF684,ZNF692,ZNF701,ZNF707,ZNF708,ZNF740,ZNF75D,ZNF76,ZNF768,ZNF784,ZNF8,ZNF816,ZNF85,ZNF93,ZSCAN29,ZSCAN31,ZSCAN4 track jaspar2020 parent jaspar off shortLabel JASPAR 2020 TFBS longLabel JASPAR CORE 2020 - Predicted Transcription Factor Binding Sites priority 2 type bigBed 6 + visibility hide bigDataUrl /gbdb/$D/jaspar/JASPAR2020.bb motifPwmTable hgFixed.jasparVertebrates2020 filterValues.name Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,ASCL1(var.2),Ascl2,Atf1,ATF2,ATF3,ATF4,ATF6,ATF7,Atoh1,ATOH1(var.2),ATOH7,BACH1,Bach1::Mafk,BACH2,BACH2(var.2),BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,BCL6,BCL6B,Bhlha15,BHLHA15(var.2),BHLHE22,BHLHE22(var.2),BHLHE23,BHLHE40,BHLHE41,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CEBPG(var.2),CENPB,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,CREB3L4(var.2),Creb5,CREM,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,Dlx1,Dlx2,Dlx3,Dlx4,DLX5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,ELF5,ELK1,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERG,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV3,ETV4,ETV5,ETV6,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FIGLA,FLI1,FOS,FOSB::JUN,FOSB::JUNB,FOSB::JUNB(var.2),FOS::JUN,FOS::JUNB,FOS::JUND,FOS::JUN(var.2),FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL1::JUND(var.2),FOSL1::JUN(var.2),FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUNB(var.2),FOSL2::JUND,FOSL2::JUND(var.2),FOSL2::JUN(var.2),FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,Foxd3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,FOXN3,Foxo1,FOXO3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,GABPA,GATA1,GATA1::TAL1,GATA2,GATA3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1b,GLI2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HLTF,HMBOX1,Hmx1,Hmx2,Hmx3,HNF1A,HNF1B,HNF4A,HNF4A(var.2),HNF4G,HOXA1,HOXA10,Hoxa11,HOXA13,HOXA2,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,INSM1,IRF1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,JDP2(var.2),JUN,JUNB,JUNB(var.2),JUND,JUND(var.2),JUN::JUNB,JUN::JUNB(var.2),JUN(var.2),Klf1,KLF10,KLF11,Klf12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF9,LBX1,LBX2,LEF1,LHX1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,MAFG,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS1(var.2),MEIS2,MEIS2(var.2),MEIS3,MEOX1,MEOX2,MGA,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,MSGN1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,MZF1(var.2),NEUROD1,NEUROD2,NEUROG1,NEUROG2,NEUROG2(var.2),NFAT5,NFATC1,NFATC2,NFATC3,NFATC4,NFE2,NFE2L1,Nfe2l2,NFIA,NFIB,NFIC,NFIC::TLX1,NFIC(var.2),NFIL3,NFIX,NFIX(var.2),NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,NKX2-2,NKX2-3,NKX2-5,Nkx2-5(var.2),NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,NR1D1,NR1D2,NR1H2::RXRA,Nr1h3::Rxra,NR1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,NR2C2(var.2),Nr2e1,Nr2e3,NR2F1,NR2F1(var.2),NR2F1(var.3),NR2F2,Nr2f6,Nr2f6(var.2),NR2F6(var.3),NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5a2,NR6A1,NRF1,NRL,OLIG1,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PAX1,Pax2,PAX3,PAX3(var.2),PAX4,PAX5,PAX6,PAX7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F1(var.2),POU6F2,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm15,PRDM4,PROP1,PROX1,PRRX1,PRRX2,Ptf1a,Ptf1a(var.2),Ptf1a(var.3),RARA,RARA::RXRA,RARA::RXRG,RARA(var.2),Rarb,Rarb(var.2),RARB(var.3),Rarg,Rarg(var.2),RARG(var.3),RAX,RAX2,RBPJ,Rbpjl,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,RFX7,Rhox11,RHOXF1,RORA,RORA(var.2),RORB,RORC,RREB1,RUNX1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRB(var.2),RXRG,RXRG(var.2),SCRT1,SCRT2,SHOX,Shox2,SIX1,SIX2,Six3,Smad2::Smad3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP8,SP9,SPDEF,SPI1,SPIB,SPIC,Spz1,SREBF1,SREBF1(var.2),SREBF2,SREBF2(var.2),SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,TBX6,TBXT,Tcf12,TCF12(var.2),Tcf21,TCF21(var.2),TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2A(var.2),TFAP2A(var.3),TFAP2B,TFAP2B(var.2),TFAP2B(var.3),TFAP2C,TFAP2C(var.2),TFAP2C(var.3),TFAP2E,TFAP4,TFAP4(var.2),TFCP2,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,THAP11,THRB,THRB(var.2),THRB(var.3),TLX2,TP53,TP63,TP73,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,VDR,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,YY1,YY2,ZBED1,ZBTB12,ZBTB14,ZBTB18,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP42,ZFP57,Zfx,ZIC1,Zic1::Zic2,Zic2,ZIC3,ZIC4,ZIC5,ZKSCAN1,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF16,ZNF24,ZNF263,ZNF274,Znf281,ZNF282,ZNF317,ZNF341,ZNF354C,ZNF382,ZNF384,ZNF410,Znf423,ZNF449,ZNF460,ZNF528,ZNF652,ZNF682,ZNF684,ZNF740,ZNF75D,ZSCAN29,ZSCAN4 track jaspar2018 parent jaspar off shortLabel JASPAR 2018 TFBS longLabel JASPAR CORE 2018 - Predicted Transcription Factor Binding Sites priority 3 type bigBed 6 + visibility pack bigDataUrl /gbdb/$D/jaspar/JASPAR2018.bb filterValues.name Ahr::Arnt,Alx1,ALX3,Alx4,Ar,Arid3a,Arid3b,Arid5a,Arnt,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,Atf3,ATF4,ATF7,Atoh1,Bach1::Mafk,BACH2,Barhl1,BARHL2,BARX1,BATF3,BATF::JUN,Bcl6,BCL6B,Bhlha15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BSX,CDX1,CDX2,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CENPB,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,Creb5,Crem,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,Dlx1,Dlx2,Dlx3,Dlx4,DLX6,Dmbx1,DMRT3,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF3,ELF4,ELF5,ELK1,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERG,ESR1,ESR2,Esrra,ESRRB,Esrrg,ESX1,ETS1,ETV1,ETV2,ETV3,ETV4,ETV5,ETV6,EVX1,EVX2,EWSR1-FLI1,FEV,FIGLA,FLI1,FOS,FOSB::JUN,FOSB::JUNB,FOSB::JUNB(var.2),FOS::JUN,FOS::JUNB,FOS::JUND,FOS::JUN(var.2),FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL1::JUND(var.2),FOSL1::JUN(var.2),FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUNB(var.2),FOSL2::JUND,FOSL2::JUND(var.2),FOSL2::JUN(var.2),FOXA1,Foxa2,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,Foxd3,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,Foxj3,FOXK1,FOXK2,FOXL1,Foxo1,FOXO3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,Gabpa,Gata1,GATA1::TAL1,GATA2,GATA3,Gata4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,Gfi1,Gfi1b,GLI2,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,Hes1,Hes2,HES5,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HLTF,HMBOX1,Hmx1,Hmx2,Hmx3,HNF1A,HNF1B,Hnf4a,HNF4G,HOXA10,Hoxa11,HOXA13,HOXA2,HOXA5,Hoxa9,HOXB13,HOXB2,HOXB3,Hoxb5,HOXC10,HOXC11,HOXC12,HOXC13,Hoxc9,HOXD11,HOXD12,HOXD13,Hoxd3,Hoxd8,Hoxd9,HSF1,HSF2,HSF4,Id2,ID4,INSM1,IRF1,IRF2,IRF3,IRF4,IRF5,IRF7,IRF8,IRF9,ISL2,ISX,JDP2,JDP2(var.2),JUN,JUNB,JUNB(var.2),JUND,JUND(var.2),JUN::JUNB,JUN::JUNB(var.2),JUN(var.2),Klf1,Klf12,KLF13,KLF14,KLF16,KLF4,KLF5,KLF9,LBX1,LBX2,LEF1,LHX2,Lhx3,Lhx4,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,Mafb,MAFF,MAFG,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSC,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF6,Myod1,Myog,MZF1,MZF1(var.2),NEUROD1,NEUROD2,Neurog1,NEUROG2,NFAT5,NFATC1,NFATC2,NFATC3,NFE2,Nfe2l2,NFIA,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NHLH1,NKX2-3,Nkx2-5,Nkx2-5(var.2),NKX2-8,Nkx3-1,NKX3-2,NKX6-1,NKX6-2,Nobox,NOTO,Npas2,NR1A4::RXRA,NR1H2::RXRA,Nr1h3::Rxra,NR1H4,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2f6(var.2),NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,Nr5a2,NRF1,NRL,OLIG1,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OTX1,OTX2,PAX1,Pax2,PAX3,PAX4,PAX5,Pax6,PAX7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,Phox2b,Pitx1,PITX3,PKNOX1,PKNOX2,PLAG1,POU1F1,POU2F1,POU2F2,Pou2f3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARG,Pparg::Rxra,PRDM1,PROP1,PROX1,PRRX1,Prrx2,RARA,RARA::RXRA,RARA::RXRG,RARA(var.2),Rarb,Rarb(var.2),Rarg,Rarg(var.2),RAX,RAX2,RBPJ,REL,RELA,RELB,REST,Rfx1,RFX2,RFX3,RFX4,RFX5,Rhox11,RHOXF1,RORA,RORA(var.2),RORB,RORC,RREB1,RUNX1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SCRT1,SCRT2,SHOX,Shox2,SIX1,SIX2,Six3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SNAI2,Sox1,SOX10,Sox11,SOX13,SOX15,Sox17,Sox2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP8,SPDEF,SPI1,SPIB,SPIC,Spz1,SREBF1,Srebf1(var.2),SREBF2,SREBF2(var.2),SRF,SRY,STAT1,STAT1::STAT2,STAT3,Stat4,Stat5a::Stat5b,Stat6,T,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX19,TBX2,TBX20,TBX21,TBX4,TBX5,Tcf12,Tcf21,TCF3,TCF4,Tcf7,TCF7L1,TCF7L2,Tcfl5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2A(var.2),TFAP2A(var.3),TFAP2B,TFAP2B(var.2),TFAP2B(var.3),TFAP2C,TFAP2C(var.2),TFAP2C(var.3),TFAP4,TFCP2,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,THAP1,TP53,TP63,TP73,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,VDR,VENTX,VSX1,VSX2,XBP1,YY1,YY2,ZBED1,ZBTB18,ZBTB33,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,Zfx,ZIC1,ZIC3,ZIC4,ZNF143,ZNF24,ZNF263,ZNF282,ZNF354C,ZNF384,ZNF410,Znf423,ZNF740,ZSCAN4