50134b292a47af4ae93e22cc4f7d290c0a46262e braney Fri Jul 29 11:28:29 2022 -0700 rewrite utility to take dbDb to assembly hubAndGenomes. diff --git src/hg/makeDb/makefile src/hg/makeDb/makefile index 61d6eec..b5f3b65 100644 --- src/hg/makeDb/makefile +++ src/hg/makeDb/makefile @@ -1,91 +1,93 @@ # Build all directories in makeDb kentSrc = ../.. include ${kentSrc}/inc/localEnvironment.mk include ${kentSrc}/inc/common.mk # List of directories to build for userApps UTILS_APPLIST = \ + dbDbToHubTxt \ hgBbiDbLink \ hgFakeAgp \ hgFindSpec \ hgGoldGapGl \ hgLoadBed \ hgLoadChain \ hgLoadMaf \ hgLoadNet \ hgLoadOut \ hgLoadOutJoined \ hgLoadSqlTab \ hgGcPercent \ hgLoadWiggle \ hgTrackDb \ ldHgGene # List of directories to build of interest only at UCSC DIRS = \ hgAar \ hgAddLiftOverChain \ hgClonePos \ hgCountAlign \ hgCtgPos \ hgDeleteChrom \ hgExperiment \ hgExtFileCheck \ hgFakeAgp \ hgGeneBands \ hgGenericMicroarray \ hgPar \ hgKgGetText \ hgKgMrna \ hgKnownMore \ hgKnownMore.oo21 \ hgLoadBlastTab \ hgLoadChromGraph \ hgLoadGenePred \ hgLoadItemAttr \ hgLoadMafFrames \ hgLoadPsl \ hgLoadSeq \ hgLoadSample \ hgLoadSqlTab \ hgMapMicroarray \ hgMedianMicroarray \ hgNibSeq \ hgPepPred \ hgRatioMicroarray \ hgDropSplitTable \ hgRenameSplitTable \ hgSanger20 \ hgSanger22 \ hgStanfordMicroarray \ hgStsAlias \ hgStsMarkers \ hgTomRough \ hgTpf \ hgTraceInfo \ hgWaba \ hgMrnaRefseq \ mdbUpdate \ schema \ tfbsConsLoc \ tfbsConsSort \ outside \ trackDbRaFormat \ - trackDbPatch + trackDbPatch \ + trackDbToTxt USE_DIRS = $(DIRS) $(UTILS_APPLIST) all: $(USE_DIRS:%=%.all) %.all: cd $* && echo $* && $(MAKE) userApps: $(UTILS_APPLIST:%=%.userApp) cd schema/dbSnoop && echo schema/dbSnoop && $(MAKE) %.userApp: cd $* && echo $* && $(MAKE) clean:: cd hgTomRough && ${MAKE} clean