50134b292a47af4ae93e22cc4f7d290c0a46262e
braney
  Fri Jul 29 11:28:29 2022 -0700
rewrite utility to take dbDb to assembly hubAndGenomes.

diff --git src/hg/makeDb/trackDb/dbDbToHubTxt src/hg/makeDb/trackDb/dbDbToHubTxt
deleted file mode 100755
index a3dde37..0000000
--- src/hg/makeDb/trackDb/dbDbToHubTxt
+++ /dev/null
@@ -1,51 +0,0 @@
-db=$1
-dir=$2
-out=$dir/hubAndGenome.txt
-rm -f $out
-
-echo "hub $db genome assembly" >> $out
-description=`hgsql hgcentraltest -Ne "select description from dbDb where name='$db'"`
-echo "shortLabel $description" >> $out
-sourceName=`hgsql hgcentraltest -Ne "select sourceName from dbDb where name='$db'"`
-echo "longLabel $sourceName" >> $out
-echo "email genome-www@soe.ucsc.edu" >> $out
-htmlPath=`hgsql hgcentraltest -Ne "select htmlPath from dbDb where name='$db'"`
-echo "descriptionUrl $htmlPath" >> $out
-echo "useOneFile on" >> $out
-echo >> $out
-
-echo "genome $db" >> $out
-taxId=`hgsql hgcentraltest -Ne "select taxId from dbDb where name='$db'"`
-echo "taxId $taxId" >> $out
-echo "groups ../groups.txt" >> $out
-echo "description $description" >> $out
-echo "twoBitPath /gbdb/$db/$db.2bit" >> $out
-echo "chromSizes ../chromSizes.txt" >> $out
-echo "chromAliasBb ../chromAlias.bb" >> $out
-organism=`hgsql hgcentraltest -Ne "select organism from dbDb where name='$db'"`
-echo "organism $organism" >> $out
-defaultPos=`hgsql hgcentraltest -Ne "select defaultPos from dbDb where name='$db'"`
-echo "defaultPos $defaultPos" >> $out
-scientificName=`hgsql hgcentraltest -Ne "select scientificName from dbDb where name='$db'"`
-echo "scientificName $scientificName" >> $out
-echo "htmlPath $htmlPath" >> $out
-blat=`hgsql hgcentraltest -Ne "select host from blatServers where db='$db' and isTrans=0"`
-blatPort=`hgsql hgcentraltest -Ne "select port from blatServers where db='$db' and isTrans=0"`
-blatDynamic=`hgsql hgcentraltest -Ne "select dynamic from blatServers where db='$db' and isTrans=0"`
-dynString=""
-if test "$blatDynamic == 0"
-then
-   dynString="dynamic $db"
-fi
-echo "blat $blat $blatPort $dynString" >> $out
-echo "isPcr $blat $blatPort $dynString" >> $out
-blat=`hgsql hgcentraltest -Ne "select host from blatServers where db='$db' and isTrans=1"`
-blatPort=`hgsql hgcentraltest -Ne "select port from blatServers where db='$db' and isTrans=1"`
-blatDynamic=`hgsql hgcentraltest -Ne "select dynamic from blatServers where db='$db' and isTrans=1"`
-dynString=""
-if test "$blatDynamic == 0"
-then
-   dynString="dynamic $db"
-fi
-echo "transBlat $blat $blatPort $dynString" >> $out
-echo >> $out