14b689e5b1445efaa903e8715103cace098b3d7a lrnassar Wed Jul 27 14:09:16 2022 -0700 Feedback from CR refs #29797 diff --git src/hg/makeDb/trackDb/human/jaspar.html src/hg/makeDb/trackDb/human/jaspar.html index 0533f24..94fd5e8 100644 --- src/hg/makeDb/trackDb/human/jaspar.html +++ src/hg/makeDb/trackDb/human/jaspar.html @@ -114,32 +114,32 @@ consistent between the two methods (TFBS Perl module and FIMO) were removed. The remaining TFBS predictions were colored according to their FIMO p-value to allow for comparison of prediction confidence between different profiles.</p> <p> Please refer to the JASPAR 2022, 2020, and 2018 publications for more details (citation below).</p> <h2>Data Access</h2> <p> JASPAR Transcription Factor Binding data includes billions of items. Limited regions can be explored interactively with the <a href="../cgi-bin/hgTables">Table Browser</a> and cross-referenced with <a href="../cgi-bin/hgIntegrator">Data Integrator</a>, although positional -queries that are too big can lead to timing out, resulting in a black page -or truncated output. In this case you may try reducing the chromosomal query to +queries that are too big can lead to timing out. This results in a black page +or truncated output. In this case, you may try reducing the chromosomal query to a smaller window.</p> <p> For programmatic access, the track can be accessed using the Genome Browser's <a href="../../goldenPath/help/api.html">REST API</a>. JASPAR annotations can be downloaded from the <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/jaspar">Genome Browser's download server</a> as a bigBed file. This compressed binary format can be remotely queried through command line utilities. Please note that some of the download files can be quite large.</p> <p> The utilities for working with bigBed-formatted binary files can be downloaded <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads" target=_blank>here</a>. Run a utility with no arguments to see a brief description of the utility and its options. <ul>