14b689e5b1445efaa903e8715103cace098b3d7a
lrnassar
  Wed Jul 27 14:09:16 2022 -0700
Feedback from CR refs #29797

diff --git src/hg/makeDb/trackDb/human/jaspar.ra src/hg/makeDb/trackDb/human/jaspar.ra
index 2ff0cff..d27d8c6 100644
--- src/hg/makeDb/trackDb/human/jaspar.ra
+++ src/hg/makeDb/trackDb/human/jaspar.ra
@@ -7,31 +7,31 @@
 longLabel JASPAR Transcription Factor Binding Site Database
 group regulation
 visibility hide
 type bigBed 6 .
 url http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all
 urlLabel View on JASPAR:
 filter.score 400
 filterByRange.score 0:1000
 maxItems 100000
 maxWindowCoverage 50000
 exonArrows on
 spectrum on
 noParentConfig on
 showCfg on
 tableBrowser tbNoGenome
-noGenomeReason JASPAR files contain billions of items. The Table Browser allows regional queries for this track, but those may timeout as well if the regions are too big. See the Data Access section in the track description page for other ways to query this data, such as command line tools and our API.
+noGenomeReason JASPAR files contain billions of items. The Table Browser allows regional queries for this track, but those may timeout if the regions are too big. See the Data Access section in the track description page for other ways to query this data, such as command-line tools and our API.
 
 	track jaspar2022
 	parent jaspar on
 	shortLabel JASPAR 2022 TFBS
 	longLabel JASPAR CORE 2022 - Predicted Transcription Factor Binding Sites 
 	priority 1
 	type bigBed 6 +
 	visibility pack
 	bigDataUrl /gbdb/$D/jaspar/JASPAR2022.bb
 	motifPwmTable hgFixed.jasparCore2022        
 	labelFields TFName
 	filterValues.TFName Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,ATF2,Atf3,ATF3,ATF4,ATF6,ATF7,Atoh1,ATOH7,BACH1,Bach1::Mafk,BACH2,BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,Bcl11B,BCL6,BCL6B,Bhlha15,BHLHA15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BNC2,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,Creb5,CREM,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,DLX1,Dlx2,Dlx3,Dlx4,Dlx5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA1,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,Elf5,ELK1,ELK1::HOXA1,ELK1::HOXB13,ELK1::SREBF2,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERF::FIGLA,ERF::FOXI1,ERF::FOXO1,ERF::HOXB13,ERF::NHLH1,ERF::SREBF2,Erg,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV2::DRGX,ETV2::FIGLA,ETV2::FOXI1,ETV2::HOXB13,ETV3,ETV4,ETV5,ETV5::DRGX,ETV5::FIGLA,ETV5::FOXI1,ETV5::FOXO1,ETV5::HOXA2,ETV6,ETV7,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FIGLA,FLI1,FLI1::DRGX,FLI1::FOXI1,FOS,FOSB::JUN,FOSB::JUNB,FOS::JUN,FOS::JUNB,FOS::JUND,FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUND,FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,FOXD3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,FOXJ2::ELF1,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,Foxn1,FOXN3,Foxo1,FOXO1::ELF1,FOXO1::ELK1,FOXO1::ELK3,FOXO1::FLI1,Foxo3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,GABPA,GATA1,GATA1::TAL1,GATA2,Gata3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1B,Gli1,Gli2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HMBOX1,Hmx1,Hmx2,Hmx3,Hnf1A,HNF1A,HNF1B,HNF4A,HNF4G,HOXA1,HOXA10,Hoxa11,Hoxa13,HOXA2,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB13,HOXB2,HOXB2::ELK1,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD12::ELK1,Hoxd13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,Ikzf3,INSM1,Irf1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,Jun,JUN,JUNB,JUND,JUN::JUNB,KLF1,KLF10,KLF11,KLF12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF7,KLF9,LBX1,LBX2,Lef1,Lhx1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,Mafg,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MGA::EVX1,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,Msgn1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,NEUROD1,Neurod2,NEUROG1,NEUROG2,Nfat5,Nfatc1,Nfatc2,NFATC3,NFATC4,NFE2,Nfe2l2,NFIA,NFIB,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,Nkx2-1,NKX2-2,NKX2-3,NKX2-4,NKX2-5,NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,Npas4,NR1D1,NR1D2,Nr1H2,NR1H2::RXRA,Nr1h3::Rxra,Nr1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2F6,NR2F6,NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5A2,NR6A1,Nrf1,NRL,OLIG1,Olig2,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PATZ1,PAX1,PAX2,PAX3,PAX4,PAX5,PAX6,Pax7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F1::SOX2,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm14,Prdm15,Prdm4,Prdm5,PRDM9,PROP1,PROX1,PRRX1,PRRX2,Ptf1a,Ptf1A,RARA,RARA::RXRA,RARA::RXRG,Rarb,RARB,Rarg,RARG,RAX,RAX2,RBPJ,Rbpjl,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,Rfx6,RFX7,Rhox11,RHOXF1,RORA,RORB,RORC,RREB1,Runx1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SATB1,SCRT1,SCRT2,Sf1,SHOX,Shox2,SIX1,SIX2,Six3,Six4,SMAD2,Smad2::Smad3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP5,SP8,SP9,SPDEF,Spi1,SPIB,SPIC,Spz1,SREBF1,SREBF2,SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,Tbx6,TBXT,Tcf12,TCF12,Tcf21,TCF21,TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2B,TFAP2C,TFAP2E,TFAP4,TFAP4::ETV1,TFAP4::FLI1,TFCP2,Tfcp2l1,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,Thap11,THRA,THRB,TLX2,TP53,TP63,TP73,TRPS1,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,Vdr,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,Yy1,YY2,ZBED1,ZBED2,ZBTB12,ZBTB14,ZBTB18,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP14,Zfp335,ZFP42,ZFP57,Zfx,ZIC1,Zic1::Zic2,Zic2,Zic3,ZIC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF16,ZNF189,ZNF211,ZNF214,ZNF24,ZNF257,ZNF263,ZNF274,ZNF281,ZNF282,ZNF317,ZNF320,ZNF324,ZNF331,ZNF341,ZNF343,ZNF354A,ZNF354C,ZNF382,ZNF384,ZNF410,ZNF416,ZNF417,ZNF418,Znf423,ZNF449,ZNF454,ZNF460,ZNF528,ZNF530,ZNF549,ZNF574,ZNF582,ZNF610,ZNF652,ZNF667,ZNF669,ZNF675,ZNF680,ZNF682,ZNF684,ZNF692,ZNF701,ZNF707,ZNF708,ZNF740,ZNF75D,ZNF76,ZNF768,ZNF784,ZNF8,ZNF816,ZNF85,ZNF93,ZSCAN29,ZSCAN31,ZSCAN4
 
 	track jaspar2020
 	parent jaspar off