d517d7563a1e14f913bf2d21893daada5e35134d
angie
  Wed Aug 24 14:15:31 2022 -0700
Use chopTabs not chopLine for VCF header parsing.  refs #29923

diff --git src/lib/vcf.c src/lib/vcf.c
index 8f7df6f..85db6c6 100644
--- src/lib/vcf.c
+++ src/lib/vcf.c
@@ -398,33 +398,33 @@
 	vcfFileErr(vcff, "Expected column %d's name in header to be \"%s\"  or \"%s\" "
 		   "but got \"%s\"", ix+1, exp1, exp2, words[ix]);
     }
 }
 
 #define expectColumnName(vcff, exp, words, ix) expectColumnName2(vcff, exp, NULL, words, ix)
 
 #define VCF_MIN_COLUMNS 8
 
 char *vcfDefaultHeader = "#CHROM POS ID REF ALT QUAL FILTER INFO";
 /* Default header if we have none. */
 
 static void parseColumnHeaderRow(struct vcfFile *vcff, char *line)
 /* Make sure column names are as we expect, and store genotype sample IDs if any are given. */
 {
-int wordCount = chopLine(line+1, NULL);
+int wordCount = chopTabs(line+1, NULL);
 char *words[wordCount];
-chopLine(line+1, words);
+chopTabs(line+1, words);
 if (wordCount < VCF_MIN_COLUMNS)
     errAbort("VCF header missing at least one of the required VCF fields");
 expectColumnName(vcff, "CHROM", words, 0);
 expectColumnName(vcff, "POS", words, 1);
 expectColumnName(vcff, "ID", words, 2);
 expectColumnName(vcff, "REF", words, 3);
 expectColumnName(vcff, "ALT", words, 4);
 expectColumnName2(vcff, "QUAL", "PROB", words, 5);
 expectColumnName(vcff, "FILTER", words, 6);
 expectColumnName(vcff, "INFO", words, 7);
 if (wordCount > VCF_MIN_COLUMNS)
     {
     expectColumnName(vcff, "FORMAT", words, 8);
     if (wordCount < 10)
 	vcfFileErr(vcff, "FORMAT column is given, but no sample IDs for genotype columns...?");