991271ccd9dbfe0d95386491f5e5e47b8e52896a markd Wed Aug 24 21:16:21 2022 -0700 link bigRmsk to standard bigRmsk track description diff --git src/hg/htdocs/goldenPath/help/bigRmsk.html src/hg/htdocs/goldenPath/help/bigRmsk.html index ffe9ef3..dacd95d 100755 --- src/hg/htdocs/goldenPath/help/bigRmsk.html +++ src/hg/htdocs/goldenPath/help/bigRmsk.html @@ -1,29 +1,31 @@ <!DOCTYPE html> <!--#set var="TITLE" value="Genome Browser bigRmsk RepeatMasker Format" --> <!--#set var="ROOT" value="../.." --> <!-- Relative paths to support mirror sites with non-standard GB docs install --> <!--#include virtual="$ROOT/inc/gbPageStart.html" --> <h1>bigRmsk Track Format</h1> <p> The bigRmsk format allows for the display of annotations of a genome generated by the <a href="http://www.repeatmasker.org/" target="_blank">RepeatMasker</a> program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. -</p> +It is the recommend method of adding RepeatMaster tracks to assembly hubs. +For a descriptions of this features of this track type, with examples, see +<a href="bigRmskTrackDescExample.html">standard bigRmsk track description</a>. <p> The bigRmsk format enables taking the annotation output of RepeatMasker and converting it into a compressed and indexed <a href="/goldenPath/help/bigBed.html">bigBed</a> file. Please see this page for a details of the bigBed format, its use, and associated tools. </p> <h2 id="bigRmsk">bigRmsk track definitions</h2> <p> The bigRmsk tracks consist of two bigBed files define by <a href="http://www.linuxjournal.com/article/5949" target="_blank">autoSql</a> schema: </p> <ul> <li>The primary bigRmsk file, define by <a href="examples/bigRmskBed.as"><em>bigRmskBed.as</em></a>, which has the annotations of repeats.